Gene Sfri_1215 details

Gene Information

• Locus tag: Sfri_1215
• ID: 4278029
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: -
• Start bp: 1426034
• End bp: 1428070
• Gene Length: 2037 bp
• Protein Length: 678 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 638133990
• Product: methyl-accepting chemotaxis sensory transducer
• Protein accession: YP_749906
• Protein GI: 114562393
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAATAT TCGAATTGAC AATCAAACAA AAAATAGCGT TGGGATTTGC CTCGATTGGC 
TTATTACTGC TTGCTGGAAG TAGTTTTTTT TATCATTCCT TGAGTAAAAT TCAAACAGCC 
AATATTAATA TCGAAACCTT AGCAGTACCA GTTCAAAACC AGTCAAATGC CTTGCAAATT 
ACCCTATTAA AAATGGCTAA AACTGGCAGT TTAGCTTATT CACAAATCGA TAATGACAAT 
ATTGACCTCA GTTATAAGCG GTTCAAGCAA TTGCAACTGG AGTTCAGAGA GGTATTAAAG 
ACATTATCTG CAAAAGTGGC TGATCAACCC ACAATGCTTC AGTCATTAAC TCAAGCTCAA 
AAATCATACC AGCAGTACGA ACAGCAATCG CACATCATGT TCGGCGCTAA ACTTGAAATA 
GGACAAAACC GCGACAACTT CGGCACACTA AAACAGCAAT TTGATAATGT TCGAATTAAT 
GCCAGTAACA ATATGATTGA TTTAGAACTG ATAGAAGCCT CGGCGGGCGA ACAGCAGTTA 
TTAAATGAAG TCATTGGCGG CGGAGTACGC ATCGACGATA TGCTGTTTAC TCTAGGCAAT 
ACCATGACGG AACTTGGCCG ATTAACCGCT GTTGATGCTG TTAATATTCA TAAACAAGAT 
GTGGCTATGT TATTAGGTAA TATTACGGTT AATGGCAACT ACTTAACCCA ACAAGCAGAG 
CCTTTGGGTG CTACTGAGCT ATTTGTAGAT TTTGACACTA ACTTGCAAAC AATTAAACAG 
TTCACCGATA AACCAGGCAG CTTGTATCTC GCACAAGAAA ATGTCGTCAA TCAGCAGCGC 
TTAGCTGAGA ATAGTAACCT GCAAGCCAAC ACCTTTTTTG ATGCAACTAA CAATCAGTTA 
GAGCAATTAG TAAAGCTCGC CAACGAACGA TTCCACCAGT TACAAATGGT TGCGATTGAT 
GACGTTAGTA CCGCACAAAC ATTGGCTGTT GCAATGGCGG TGGTGTTTGT CTTGATGGCG 
ATGTTTATCT ATTACTTTAC CTCAAAAGCC ATGTTAGGCC CCCTACAAGC CATTAACAGT 
GCATTATCGC GAATTGCCAG CGGTGATTTA TCTCGGCGAT TAACCAAGAG AAATAATGAT 
GAATTTGGCG AGTTGATGGA TAACATCAAT AAACTGTCTG ACGACCTGAC TAATTTATTG 
CAAGACATTA GTCGTGATGC ACACCTGCTA GATGAATCCG CTATTCGCTC GCAAGCGCAA 
AGCGAAACAA TATCCCTTTC AGCTTCCGCA CAAATTAACA ATATTAGCCA AGCTAAGCAG 
CTTGCAGAGC AAATACATCA CAGTTCAAAT CAGGTCAATG AGCAAGCCTC TGAATCTGAA 
CAACATGTTA AATTAGCTTC CTCGCAAGGA TTACAAATAA AAAGCATTGC TAATGATAAC 
CGTTTCCGTA TTGAAGCCTT ATCAACCAGC TTGCGCGATT CTGTGGAGAT CATGGCAAAA 
CTCAGTCAGC ACAGTGATAA TATTGGTGGG ATTTTAACCA CCATCAGTGC TATTGCCGAT 
CAGACCAATT TGCTAGCATT GAATGCTGCA ATTGAAGCTG CAAGAGCGGG TGAACATGGG 
CGTGGCTTTG CCGTTGTTGC TGATGAGGTT CGTTCATTAG CCTCTAGAAC GCAACTATCA 
ACCGCCGAAA TTCAAACCAT GATTAGTGCC TTACAGCAAG AAACAACTTA TGCCGTTACA 
GCAATCTCAC AAGGACAAAT ACAAGCCAGT GAATGTGTAG AACAAAGCCA GTCGTTGCAT 
GATGCAATCG AGCAAATAGA AGCGGCGCTT AGCACTATTA ATGGTATGAG CCAAAGCATT 
ACTCATGCAG CCAATGAACA AGTAAGCCAT AGCCAACAAA TAGAGCAAAC AATGACCCAA 
ACAGCCGAGG CAGCAGAACA AAATGCTCAG GAGTCTGCTT CAATGACACA GCAAAGCCAG 
CAATTAAATC AATTAGCTCA TTCGCTTACC ACCTCTGTTG AACGCTTTAC ACTCTGA 

 

Protein sequence

MTIFELTIKQ KIALGFASIG LLLLAGSSFF YHSLSKIQTA NINIETLAVP VQNQSNALQI 
TLLKMAKTGS LAYSQIDNDN IDLSYKRFKQ LQLEFREVLK TLSAKVADQP TMLQSLTQAQ 
KSYQQYEQQS HIMFGAKLEI GQNRDNFGTL KQQFDNVRIN ASNNMIDLEL IEASAGEQQL 
LNEVIGGGVR IDDMLFTLGN TMTELGRLTA VDAVNIHKQD VAMLLGNITV NGNYLTQQAE 
PLGATELFVD FDTNLQTIKQ FTDKPGSLYL AQENVVNQQR LAENSNLQAN TFFDATNNQL 
EQLVKLANER FHQLQMVAID DVSTAQTLAV AMAVVFVLMA MFIYYFTSKA MLGPLQAINS 
ALSRIASGDL SRRLTKRNND EFGELMDNIN KLSDDLTNLL QDISRDAHLL DESAIRSQAQ 
SETISLSASA QINNISQAKQ LAEQIHHSSN QVNEQASESE QHVKLASSQG LQIKSIANDN 
RFRIEALSTS LRDSVEIMAK LSQHSDNIGG ILTTISAIAD QTNLLALNAA IEAARAGEHG 
RGFAVVADEV RSLASRTQLS TAEIQTMISA LQQETTYAVT AISQGQIQAS ECVEQSQSLH 
DAIEQIEAAL STINGMSQSI THAANEQVSH SQQIEQTMTQ TAEAAEQNAQ ESASMTQQSQ 
QLNQLAHSLT TSVERFTL