| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1019 |
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| Symbol | |
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| ID | 4277134 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1194719 |
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| End bp | 1197328 |
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| Gene Length | 2610 bp |
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| Protein Length | 869 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638133787 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_749710 |
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| Protein GI | 114562197 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG3437] Response regulator containing a CheY-like receiver domain and an HD-GYP domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGGTG AGAACAAAAG AAGTCCATCA AGTTTAGTCA AGTCTGATGT CATTGAAACT
TTGCTTGGCC TCAACAGTGA GGATGATGTC GATCTGTTCG AAGCAGCAAT CGAAGAAGTC
ACTGAACGCA GACATGCAGA AGAGGCATTG TTAAATGCAG GTGCGTTGCA GCGAGCAATT
TTTAATAGCG CTAACTTCTC TTGTATTGCC ACTGATGCTA AAGGGGTCAT CCAAATTTTT
AACGTTGGTG CCGAGCGGAT GCTAGGTTAT TCGGCCATCG AAGTGGTGGA CAACATCACC
CCTGCAGAGA TATCAGACCC TCAGGAGATC ATCGCCCGTG CCGAGGCGCT TTCTGTAGAA
CTCAGTACGC CAATAGAACC TGGTTTCGAC GCGCTGGTGT TTAAAGCCAC ACGCGGTATT
GAAGACATTT ATGAATTAAC TTATATCCGT AAAGACGGTA GTCGCTTTCC TGCTGTTGTG
TCGGTTACCG CACTACGCGA CGATCAAGGT ATTATCATAG GTTATCTTTT GATCGGCACA
GATAACAGTG TTGGCAAGCA GGCGGAAGAA GCTTTGCTCA AAGCAGGTGC ACTGCAGAAA
GCCATTTTCA ACAGTGCTAA CTTTTCCAGT ATTGCTACCG ACGCTCATGG CGTTATCCAG
ATATTTAATG TGGGTGCCGA GCGAATGCTG GGTTATACAG CTGACGAGGT GATGAACAAG
ATCACACCCG CAGATATCTC CGACCCCAAA GAAGTCATCG AGCGAGCTAA AGAGCTCAGT
ATTGAACTGG ATACTGCAAT CACACCTGGT TTTGATGCGT TAGTATTTAA GGCCCGGCGC
GGCATTGAGG ATATCTACGA GCTAACTTAC ATACGCAAAG ATGGCAGCCG CTTCCCGGCA
GTAGTGTCAG TCACTGCTTT GCGTGATGAG CACAAGGCTA TCATTGGTTA TTTGTTAATC
GGTACCGATA ACACCGCGCG TAAACGTATC GAGGAGGAGC AAAAAGAACT CGGTCGACGT
TTGCAAGATC AACATTTCTA TACCCGTAAT CTGATTGAAT CCAACATTGA TGCTCTGACG
ACCACAGATC CTTCCGGTAT CATTACCGAT GTGAATAAAC AAATGGAAGA ACTTACAGGT
AACAACCGTG ACTCCCTTAT AGGCACTCCA TTCAAAGACT ACTTCACCGA TCCTGAGTTT
GCTGCGGCTG GCATAAAAAG GGTGTTAAGT GAGAAGATAA TCTCTGATTA TGAATTGACC
GCCCGCACCA AGAACGGTAA AGAAACCGTG GTTTCCATTA ATGCGACCAC CTTTTATCAC
CGAGACAATA AACTGCAAGG TATTTTTTAT GGCGCTCGCG ATGTAACTGA ACGTAATCGC
CTAAATCAAA AACTGCTGGA AAAGAACATC GAACTGGAAA ATGCTAAAGC GGTGGCTGAG
AAAGCCAATC TCGCCAAATC GGATTTTCTT TCCAGTATGA GCCATGAGCT ACGCACACCA
CTGGGTGCGA TTCTAGGTTT TGCACAGCTC ATGGAATCGA GTACACCTGC GCCGCCTCCT
GCTCAAAAAC GCAGCATTGC TCAGATCCTC AAAGCAGGAT GGTACTTGTT GGAGCTTATC
AATGAAATAC TTGACCTAGC ACTAATCGAA TCCGGCAAGC TACCCATGTC ACTGGAAGCT
GTTTCGCTGT CCGAAGTCAT GCAAGAATGT GTGTTGATGA GTGAGCCGCA AGCTCAACTC
CATGACATCA AAGTCGTCTT TACCCGATCT ACGACTAAAG ATTTTCTTAA TGTCGATAGA
ACCCGACTAA AACAGGTAAT TATTAATCTG CTTTCCAATG CAATTAAATA TAACCGGAAG
GGCGGAAGCG TGATACTGGA ACACAGCCAA AGCAGTGACG ATATGATGCG GTTCAGTGTT
CGAGATACAG GTGAAGGATT ATCAGCTGAG CAACTTGGGC AACTTTTCCA GCCCTTTAAT
CGCCTCGGTC AAGAAGCCAA TAATCAAGAA GGTACAGGAA TCGGTCTAGT GGTTAGTAAG
CGTTTGGTTG AATCTATGGG GGGAGTCATT GGCGTGCAAA GTACCGTTGG CGTGGGTAGT
GTCTTCTGGT TTGAACTAAA GCGAACTGAC GAACCCGTAT CTAACCTTGC TGACAGCGCA
ATAATGGTCA CGGAAACGCT ACAATATGAA GATTCTGAGC GTTTGCAAAC CTTACTATAT
GTCGAAGATA ATCCGGCTAA TTTGATGCTT GTTGAGAATA TTATTTCTCG TCGGCCTAAT
TTGCGTTTTC TCAGTGCTGC GGATGCTATT CAAGGTATTG AAATGGCACA TACGCATCAG
CCGGATGTTA TTTTGATGGA CATTAATCTA CCGGGAATTA GCGGCTTGAT CGCATTGAAA
ATTCTCAGGG AAAGTCCGAT AACAGCATCG ATACCTGTGG TAGCTCTCAG TGCAAATGCC
ATTCCCCGGG ACATTGAAAA AGGTTTGGAT GCTGGCTTCT TTCATTATCT TACTAAACCA
CTGCGGATCA ATGAGTTTCT GAAGACTCTG GATATAGCGC TTGAGTATGC CAATAAGTCT
GCTGTAATCG CTGATGATGA GGAAAAATAA
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| Protein sequence | MKGENKRSPS SLVKSDVIET LLGLNSEDDV DLFEAAIEEV TERRHAEEAL LNAGALQRAI
FNSANFSCIA TDAKGVIQIF NVGAERMLGY SAIEVVDNIT PAEISDPQEI IARAEALSVE
LSTPIEPGFD ALVFKATRGI EDIYELTYIR KDGSRFPAVV SVTALRDDQG IIIGYLLIGT
DNSVGKQAEE ALLKAGALQK AIFNSANFSS IATDAHGVIQ IFNVGAERML GYTADEVMNK
ITPADISDPK EVIERAKELS IELDTAITPG FDALVFKARR GIEDIYELTY IRKDGSRFPA
VVSVTALRDE HKAIIGYLLI GTDNTARKRI EEEQKELGRR LQDQHFYTRN LIESNIDALT
TTDPSGIITD VNKQMEELTG NNRDSLIGTP FKDYFTDPEF AAAGIKRVLS EKIISDYELT
ARTKNGKETV VSINATTFYH RDNKLQGIFY GARDVTERNR LNQKLLEKNI ELENAKAVAE
KANLAKSDFL SSMSHELRTP LGAILGFAQL MESSTPAPPP AQKRSIAQIL KAGWYLLELI
NEILDLALIE SGKLPMSLEA VSLSEVMQEC VLMSEPQAQL HDIKVVFTRS TTKDFLNVDR
TRLKQVIINL LSNAIKYNRK GGSVILEHSQ SSDDMMRFSV RDTGEGLSAE QLGQLFQPFN
RLGQEANNQE GTGIGLVVSK RLVESMGGVI GVQSTVGVGS VFWFELKRTD EPVSNLADSA
IMVTETLQYE DSERLQTLLY VEDNPANLML VENIISRRPN LRFLSAADAI QGIEMAHTHQ
PDVILMDINL PGISGLIALK ILRESPITAS IPVVALSANA IPRDIEKGLD AGFFHYLTKP
LRINEFLKTL DIALEYANKS AVIADDEEK
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