Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0921 |
Symbol | |
ID | 4277334 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 1084130 |
End bp | 1084912 |
Gene Length | 783 bp |
Protein Length | 260 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 638133687 |
Product | extracellular solute-binding protein |
Protein accession | YP_749612 |
Protein GI | 114562099 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACGCT TGCCTTTAAC GCTTTATATC ATCTTCCTCA GCATTTGCTT TGCACTCACG CCAACGGGCG ATCTATTTGC AAAAGACCAA TCGCAAGTTC GATTTATCAC CCATCCATTA CCCCCATTTA GTTACATTGA TAATGATCTT TTAAGCGGTT TTTCTATCGA TATTGTTCAA GCGATGATGC TACATACCCA GCAAACAGCC AACATTGAAA TGTACCCCTT TAATAGAGCT TTTCAGTTAT TAAAGTCGCA ACCCAATACT GCGTTATTTG TCATTGCTAA AAGGCCGGAA AGAGAAGTAA ACATGAAATG GGTAGGCCCC ATTATTAGTA GCGGAGTGTA TTTTTACCAA AAGCGTAATT CCGGACTATC ACTAGCAGAT TTAGAAGACT TAAAACGAGT CCGAAATGTC GGCGTAGTGC TTGGTAATGC TGACCATACC TATTTGGACT CCCAAGGATT CACTAACCTC AGTACTGACA AATCCCAATT ACAATCGCTC AAAATGCTCA GTTACGGCAG AGTTGATGTT GCGCCGATGA GCGAGCTAGT AATGCCTTTT TTGGCAAAAG CAGCCGATAT CGATATCAAC TCAATAGAAC GTACTCCTAT TAAGTTGTAC GACTCTACCT TATATATTGC GTTTTCAAAC GACACCACTG ATGAGGCGGT TGCACTATGG CAACAAGCAT TTGATGAGTT AAAATCATCA GGGATGTACC AGACCATTTA TCAAGATTAT TTTCCAACTG ATACCAATAT TGCCAAGCGA TAA
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Protein sequence | MKRLPLTLYI IFLSICFALT PTGDLFAKDQ SQVRFITHPL PPFSYIDNDL LSGFSIDIVQ AMMLHTQQTA NIEMYPFNRA FQLLKSQPNT ALFVIAKRPE REVNMKWVGP IISSGVYFYQ KRNSGLSLAD LEDLKRVRNV GVVLGNADHT YLDSQGFTNL STDKSQLQSL KMLSYGRVDV APMSELVMPF LAKAADIDIN SIERTPIKLY DSTLYIAFSN DTTDEAVALW QQAFDELKSS GMYQTIYQDY FPTDTNIAKR
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