| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0799 |
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| Symbol | |
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| ID | 4277895 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 939783 |
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| End bp | 943091 |
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| Gene Length | 3309 bp |
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| Protein Length | 1102 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638133567 |
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| Product | transcriptional regulator, CadC |
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| Protein accession | YP_749492 |
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| Protein GI | 114561979 |
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| COG category | [K] Transcription |
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| COG ID | [COG3710] DNA-binding winged-HTH domains |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGACA GCACTTTCTT TTTTGGCGAT TGGCAAATTA ATCCACAAAG TAATAGCGTT
CAGTCTGGCG ATGTTATTCG CAGTCTTGAA CCCAAAGCCA TGGATGTGTT GCGTTTACTG
TGCCAACACC AAGGGGAAGT GCTAGCAGCA GACGATATTA TTAACCACTG CTGGAACAGC
ATCGCCATTG GTGATAATCC GCTGCATAAA GTCATTACCC AGCTGCGTAA AGCATTAGGC
GATCAAGCAT CTAATCCGCA GTACATAGAA ACCATCCGCA AACGCGGTTA TCGCACCATC
GCCAGTGTTG AATTCCCTAT TGGTCATCAT ACCAAAGTCA CTACCCAACA ATGGCAAGGC
GCCTCGCCGT TCCCGGGGTT ACGCGCATTT GACACCAACG ACTCCAATGT ATTTTTTGGC
CGAAGTGAGC AAGTTGACAC CTTATTAAAT CGCATTACTA AACAAGTTGA ATTTGGCCGA
GCCTTCTGCT TAATCCTCGG CCCGAGCGGT ACAGGTAAAT CATCGTTAAT TAATGCCGGT
ATCATGCCGA ATTTAATGTC AAAAAATGGC TTTAACGGGG TTGGCGTAAT CGATAATGCC
AACCTAGATT TAGCCGATGT CACTAAAGGC AGGTTAATTA TCGATATCGC CAGTGCGATG
CTCGACTGGG AAATCAATGA CCAAGCGGTG TTTACCGACT GCAGTGCCGA TATGTTGGCA
AACAAACTGC AAAACGACAT CAACGCCGTT ATTGAATATT GTCAGCTAGC TTTAGCCAAA
TACTCGTCCA TCAATGATGA CAATGCCCCC AAATACAGTC GGCCCCATTT TTCATTGTTT
ATCGACCGTT TAGAAATCTT ATTAGCGTCG CCATTATTTA CCGAATCCGA ACGTAACAAT
GTATTAGATA TCCTCGAAAC GCTTGCGGTT TCAGGGGTAG TATTAATGAT TAGTGCTTGC
CGCAATGACT TTTACCCTCA GGTCGTTAGC CACCCAAGCC TAATGGCAGG CAAAGCCAAT
GGCTCACATT TCGATTTATC GGCCCCAACC CGAGCAGAGC TGATGCAAAT GATCCGCTTG
CCGGCCAATG CAGCTAACCT CACATGGACA CTCGATCCCG ATACGGCAAT GCCGTTGGAC
GAAATACTTT GCAGTGAAGC CGCCTCAAAC CCCGATGCTC TGCCCATGTT GCAATACACC
TTGCAATCAC TGTATTTAAA CAAAGATGAC AACAACCAAT TATTGGTGTC GGTATACCAT
TCGCTTGGGG GGATTGAAGG CGCCATCGGT AAAAATGCCG AAGAAGTGCT CAACCAATTA
AACAACAGCG AACGCGCCGC ACTGCCTAAA ATACTGTCGA TGTTAGTCAC CCTAACCGAA
GATGAAAAAT CGATCACTAG CAGCACCGCC CGCTGGAGCG ATCTCAGTAG TGATGCCGAA
ATAAACCTTG TCAAAGCTAT GGTTGATAAC CGTTTGTTTG TTTCGCATCT GCAACAAGAT
CAAGCCTGCT TTAGTATTGC CCACGAAGCG CTATTAAGGC GCTGGCCCCG CGCGACCCAA
TGGATAACCG AGCACAAGGA CAGTTTAGCG ATTAAAAGCC GTTTACAGCA TCAATCCAAC
CGCTGGCTGG CGGAGTCAAA AAGTAGTGCT TATTTACTGG CAGAAGGTAA ACCATTGGCA
GAAGCAAGCA CATTGCTCAA TAATCAATTG TTTAACCTAG AGCCTCAAGA ACTCGCCCTC
ATTCAAGCCT CTAGCAAACA AGCCAACATC GGGCGCTGGC GCCGCCGTGC AGTCATGCTA
GCCCTTGTTA CACTGACATT GATTTCTGTC GCCATGAGTG TTCGCAGCAT TGAGGCCGAA
ACCCAGGCAC AACAAAAACG CCTGGCGGCA GAAAACTTAC TCGGTTTTAT GGTGGGTGAA
TTCGCCGACA AAATGCGCGG TATTGGCCGC ATGGACTTGC TCGATGGTAT CAGTAATAAA
GCATTAGAAT ATTTCAGTGA CGTTTCCGCC GACGATGCCA GCTATTTAAG CTTTGAAGCC
CAGTTTCAGC ACAGCCAAAC CTTAGAGGCC ATGGGCGAAG TGGCCTATTC TCGCGGCAAT
ACCGACGAAG CCCACAGCGC CTTAATCGCC GCCCGTGAGC GCATGCTGCC GTTACTCGAA
ATACAACCCC AAAACCTCAA CTTACTTAAA ACCTTAGGCG CCAATGCTTT TTGGCTCGGC
AGGCTTGAAT ACGATAAAAG TGATTGGGCA GCAACGCAGC CTTGGTTTGA ACAATATTTA
ACATACAGCC AAGCCATGTA TCAATACGCG CCAGACGATA ACGATGCGTT AATGGAGTTG
TCGTACGCAC AAAACTCTCT TGGCTCGATA CACATGAAGC AGCAAAACTT TGCTGCTGCA
CGAGAGGCAT TTGAGCAATC ATTACAGTTA AAACAAAAAG CACTAGTTCA AGACCCAAGT
AATAGCAAAA TGATTGCTGA TGTGGCCAAT GCACAATCAT GGATTGCCAG TGCAGCCACC
GCCCAAGGCG ACATTACCGC GGCGATACAA ATACACCAAC AAATTCAACA GCAGCTGTCC
AATCAAGCAT TAGAAAAACA ACCTTATTTA CTTGACAGGT TATCGAGCAG CTATCAAATA
CTGGCTAATT TATTAAATTA CCAAGGCCAC CAACAACAGG CTTTTGAAAA AGCACAGCTT
AGTTTAGTCG CAATTACCGA TGCCCTAAAA CAAGATCCTG ATAATGATAT TTGGAAGATC
CAACAATATT ACGCCTACTT GAATATGCTG GCATTCAGTA CTAAACCCAT TGAACACACC
ATGGGTCACA GTATTGACTC ATTAGCTACC ATGCTTGATG AAGACATCAC CTTAAAAACA
TCTGCTAAAA AAATGGATGT GTGGGCAACC TATCAACTGG CTACAGCAAA TTATTTAGCA
TCACAAGGAT TATTGTCAGA TAGCCTAAAC TATGCCCAAC AGGCAACAAC CTCTTTTAAT
CAATTAATCA ATGAGTTTAA ACAAAATTCT TATTACTTGG CTCGTTTAGC CCAAAGCAAT
ATGTTAACAG CAACATTGCT GACTCAATTA GGCCAGCCAC AACAAGCCAA CTCTCTGTGT
CTGCAAACTA AAAAACAATT GGCACTGATT GCCGACAAAA ATAATGAGCC CAAATTTACC
GTGCCCTTCG CTAAGGCCCT CGATTGCCTC GGTGAGCTAA CACAACACCC CAATTTAGTT
CAACTGCTAG AAAGCTCAGC CATAACCGAT TTTAGGTTTA ATCCTAAAAC TAAAAAACCT
AACCTCTAA
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| Protein sequence | MNDSTFFFGD WQINPQSNSV QSGDVIRSLE PKAMDVLRLL CQHQGEVLAA DDIINHCWNS
IAIGDNPLHK VITQLRKALG DQASNPQYIE TIRKRGYRTI ASVEFPIGHH TKVTTQQWQG
ASPFPGLRAF DTNDSNVFFG RSEQVDTLLN RITKQVEFGR AFCLILGPSG TGKSSLINAG
IMPNLMSKNG FNGVGVIDNA NLDLADVTKG RLIIDIASAM LDWEINDQAV FTDCSADMLA
NKLQNDINAV IEYCQLALAK YSSINDDNAP KYSRPHFSLF IDRLEILLAS PLFTESERNN
VLDILETLAV SGVVLMISAC RNDFYPQVVS HPSLMAGKAN GSHFDLSAPT RAELMQMIRL
PANAANLTWT LDPDTAMPLD EILCSEAASN PDALPMLQYT LQSLYLNKDD NNQLLVSVYH
SLGGIEGAIG KNAEEVLNQL NNSERAALPK ILSMLVTLTE DEKSITSSTA RWSDLSSDAE
INLVKAMVDN RLFVSHLQQD QACFSIAHEA LLRRWPRATQ WITEHKDSLA IKSRLQHQSN
RWLAESKSSA YLLAEGKPLA EASTLLNNQL FNLEPQELAL IQASSKQANI GRWRRRAVML
ALVTLTLISV AMSVRSIEAE TQAQQKRLAA ENLLGFMVGE FADKMRGIGR MDLLDGISNK
ALEYFSDVSA DDASYLSFEA QFQHSQTLEA MGEVAYSRGN TDEAHSALIA ARERMLPLLE
IQPQNLNLLK TLGANAFWLG RLEYDKSDWA ATQPWFEQYL TYSQAMYQYA PDDNDALMEL
SYAQNSLGSI HMKQQNFAAA REAFEQSLQL KQKALVQDPS NSKMIADVAN AQSWIASAAT
AQGDITAAIQ IHQQIQQQLS NQALEKQPYL LDRLSSSYQI LANLLNYQGH QQQAFEKAQL
SLVAITDALK QDPDNDIWKI QQYYAYLNML AFSTKPIEHT MGHSIDSLAT MLDEDITLKT
SAKKMDVWAT YQLATANYLA SQGLLSDSLN YAQQATTSFN QLINEFKQNS YYLARLAQSN
MLTATLLTQL GQPQQANSLC LQTKKQLALI ADKNNEPKFT VPFAKALDCL GELTQHPNLV
QLLESSAITD FRFNPKTKKP NL
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