Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0797 |
Symbol | |
ID | 4277893 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 937732 |
End bp | 938856 |
Gene Length | 1125 bp |
Protein Length | 374 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638133565 |
Product | diguanylate cyclase with PAS/PAC sensor |
Protein accession | YP_749490 |
Protein GI | 114561977 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTACCA ATGATAAATT AACTGAACTC AATGCCACGA TTTCTCGTGT GACTAAATTA ACAGACTCAT TTGCTAAATT TCCCCGTTCA ATAAAAATAC CATTGCGTCT TGATGATGAA ATCCTATCCG ACTCATCATT TACGGATGTC GCTTTTGATG CCACTTCAGC AAGTCATCAT AATGGCAAAA TGGCAGTAGC AGATAACTTA CAAATTAGCA CCTTGCTCAA TGTGATCACG GCTATTTCAG AAGCGATTTT TGTGATTAAC TCTGCGGGTG TGATTGAGAT GATCAATCCG TTAGGCGCTA AATTATTCGG TGCCCCAGCC GAAATGTTAA TCGGTCAAAC CTGGACCGAT TATTTACAAA GCCCTTTTAA AGATGAGTAT CAATCTTTAT TTTCTTTGTG GAATAGCGCC AGCGATGAAG CCAATAAAGT GACTCAGTTT AATCATGGTC CTAAAGAAAT TATTATTAAC CGCGCCGACA GCACGTTACT CGAAGCAGAC TTATCATTGT CATGTTTACC GTCGATGCAG ATAGGATCTG AGCCGTTATT TATAGGCATC ATGCATAATC TCACTACGCA TAAAGCCGAG TACAACAAAC TGCGCCACTT AGCCCATACA GACAAATTAA CCGGCCTTTC CAACCGTCAC GCTTTTGATG ATGCTCTGCA AACCAACTGG AACGACAGTA TTAACCACGA CCAACCGCTG TGTTTAATCA TTATCGATGT CGATTATTTT AAAATGTTTA ATGACCAGTA TGGTCATGTT AACGGTGATA AATGTTTGCA AAAAATTGCT CAAGTACTGG CAGAGGTGCT CCCGTCTAAC AATGCGATGG CAGCCCGTTA TGGTGGTGAA GAGTTTGTGG TCATTCTGCC CAACAGCAAC CCGTTAACAG CAGAATACAT TGCCAAAAAT ATTCAACGTC GTATTAACCA GTTAAGCTTT ACCGATATAG GGTTACCTGC ACAAACCAAA ATCAGTGTCA GCCAGGGCAT TGCCTGTGAA CGCAGTGGCC AATACCGCAC GCCAACCGCA CTGGTTTGCG CAGCAGACAC AGCACTTTAC CGTGCAAAAT CAACTGGCCG TAACCGCATC AATATGAGTA GCTAA
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Protein sequence | MFTNDKLTEL NATISRVTKL TDSFAKFPRS IKIPLRLDDE ILSDSSFTDV AFDATSASHH NGKMAVADNL QISTLLNVIT AISEAIFVIN SAGVIEMINP LGAKLFGAPA EMLIGQTWTD YLQSPFKDEY QSLFSLWNSA SDEANKVTQF NHGPKEIIIN RADSTLLEAD LSLSCLPSMQ IGSEPLFIGI MHNLTTHKAE YNKLRHLAHT DKLTGLSNRH AFDDALQTNW NDSINHDQPL CLIIIDVDYF KMFNDQYGHV NGDKCLQKIA QVLAEVLPSN NAMAARYGGE EFVVILPNSN PLTAEYIAKN IQRRINQLSF TDIGLPAQTK ISVSQGIACE RSGQYRTPTA LVCAADTALY RAKSTGRNRI NMSS
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