Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0267 |
Symbol | |
ID | 4278070 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 296557 |
End bp | 298065 |
Gene Length | 1509 bp |
Protein Length | 502 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638133021 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_748968 |
Protein GI | 114561455 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGAAAT TCCCACTTTC TAGTGTGCTA TTAGGCGCGT TTGTTGGGGT AATGATCCCC GCGGCTTTCA CATCACCTGT CGCTTATGGC GCAGAGCACG ATCATGCCCA GCATCAGTCG CAAGCCAGTA AAACTTATAC TTGCCCGATG CATCCTGAAG TGATCAGTGA TAAAGAGGGA ACCTGCCCCA TCTGTAATAT GTTTCTCGTC GTCAAAGAAG AGGAAGAAGA GTCCACCATT GACGACACTC AAGATCCAAT GGCAAATATG CAAAGTGCGA CTCCTGTAAA ACAAAGCCAA GCAGATAAGG TATTTAGTCA ACCTAAGCCC ACATTAGTGC CGGCAGCAAA TCAGAGCGAT AGCACCAATG TAAAATATGT CTGTCCAATG CATCCACATG TGGTGTCCGA TGCTCCTGGA ACCTGCCCTA TTTGCGGGAT GAACCTAGAG AAAGTCACCG TTACCGATGC AAGCCAAGAA ATTGTTGTCG GTGTTTCTGG CGGGATGCAA CAAGCTTTGG GTATGCGAAG CCATGTAGTT GAAAAAACCA GTTTGTCGCG CCAAGTGAAT ACCATAGGCA CGGTGCAATA TAATGAAAAT GCGATTGGCC ATGTGCATAC ACGCGCAACC GGATGGATAG AAACGCTCAC GGTACATAAC GTGGGACAAC AGATAAAAAA AGGCCAACTT TTATATGAGC TTTATTCACC CGAGCTCGTC AATGCCCAAG ACGACTATTC CCAAGCTCAA GACTACCTTT TGCAAGATAA AAAACGAGGT AGCAGTTTAT TACTTAAAGC ACGTAAACGC TTAGAGCTGC TTGGCGTCGA TACCTCGATA ATTGATCGTT TAGAAAAAAC CGGTGAAACC ATTTTTAAAG TGCCTTTTTA TGCCCCACAA GATGGCTTTA TCAGTAAGCT AACCGTGCGT CATGGCATGT ATATTCAGCC TGGAGATACC TTGTTTGAAA TCGTTAATTT AGACAGTGTA TGGGTCATTG CTGATGTATT TGAAAATGAA CAAAGCTGGC TACAACAAGG CCGTAAAGTC AGTGTTAGCG CTGCAGCACA AGGGCTGTTT GATATTGACT CGACAATTGA CTATATCTAC CCAGAATTAG ACCCTGTCAC CCGAGCGATG CGGGTGCGGA TCAAGCTTAA CAATCATAAC GACAAACTCA GACCAGGCAG TTTAGTTGAT GTGACCTTAT TTGGCCTGCC AAAAGATAAT GTGCTCACTG TACCAACTGA AGCACTGATC CTTACCGGAC GTGAAAACCG CGTGGTGGTG CAACGCAGTG ATACCAGCTT TGCTTCGGTG CCAGTCAAAA TTGGTATGAT GGCAGACGGT AGAGCCGAAA TCTTAGAAGG ACTGAATGAA CATGACAAAG TGGTTATTTC AGGGCAGTTC TTATTAGATT CAGAAGCCAG TATTCAAGGC AGTTTACAGC GTTTAAGTAA TGCGCCAACG ACCAAAGAAT CAACCACTAC CGATGCTCAC CAGCACTAA
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Protein sequence | MKKFPLSSVL LGAFVGVMIP AAFTSPVAYG AEHDHAQHQS QASKTYTCPM HPEVISDKEG TCPICNMFLV VKEEEEESTI DDTQDPMANM QSATPVKQSQ ADKVFSQPKP TLVPAANQSD STNVKYVCPM HPHVVSDAPG TCPICGMNLE KVTVTDASQE IVVGVSGGMQ QALGMRSHVV EKTSLSRQVN TIGTVQYNEN AIGHVHTRAT GWIETLTVHN VGQQIKKGQL LYELYSPELV NAQDDYSQAQ DYLLQDKKRG SSLLLKARKR LELLGVDTSI IDRLEKTGET IFKVPFYAPQ DGFISKLTVR HGMYIQPGDT LFEIVNLDSV WVIADVFENE QSWLQQGRKV SVSAAAQGLF DIDSTIDYIY PELDPVTRAM RVRIKLNNHN DKLRPGSLVD VTLFGLPKDN VLTVPTEALI LTGRENRVVV QRSDTSFASV PVKIGMMADG RAEILEGLNE HDKVVISGQF LLDSEASIQG SLQRLSNAPT TKESTTTDAH QH
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