| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0179 |
|---|
| Symbol | |
|---|
| ID | 4277581 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 187367 |
|---|
| End bp | 188017 |
|---|
| Gene Length | 651 bp |
|---|
| Protein Length | 216 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 638132929 |
|---|
| Product | cytochrome c biogenesis protein CcmA |
|---|
| Protein accession | YP_748880 |
|---|
| Protein GI | 114561367 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG4133] ABC-type transport system involved in cytochrome c biogenesis, ATPase component |
|---|
| TIGRFAM ID | [TIGR01189] heme ABC exporter, ATP-binding protein CcmA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACCATAT CAAACCAATC ACAAGTGCTA TTAAGTGCCA ACGAATTAAC CTGTATTCGG
GAAGAGCGCA TTCTATTTGA TGGACTGAGT TTTAATATCA ATGCGGGGGA TATTGTCCAG
ATTGAAGGCC CTAATGGTGC AGGTAAAACC AGTCTTTTAC GAATTATTGC TGGTTTGTCA
CGTCCCTATG CTGGTGAAGT TGAATATAGT GGTGAAAACA TCAATCGCTG TAGAGACGAA
TTTAATCACG ACTTACTATA TCTTGGGCAT TTAGCTGGCG TAAAAAGTGA GCTAACAGCA
GAAGAAAATC TTAACTTCAA TTTAAGAATT AGTGGCTATG ATGATTTCGA TACCACTGCA
ATTTTGGCGA AAGTCAATTT AACCGGTTTT GAAGAAGCAC TAGCAGGTCA TTTATCTGCG
GGACAACATC GACGTACCGC ATTAGCAAGA TTACAACACA GTAATTGTAA AATATGGATC
CTCGACGAAC CTTTTACCGC TATTGATAAA AAAGGTGTAG AAGAATTAGA GCAACTTTTT
ATTCAACATG CAGAATCGGG TGGATGTGTA ATATTAACCA CACATCAGGA TATGAGCATT
ATTAGTGATG CCATGTTACG TAAAATCACT CTCGACTATC GCTTTGTATA A
|
|---|
| Protein sequence | MTISNQSQVL LSANELTCIR EERILFDGLS FNINAGDIVQ IEGPNGAGKT SLLRIIAGLS
RPYAGEVEYS GENINRCRDE FNHDLLYLGH LAGVKSELTA EENLNFNLRI SGYDDFDTTA
ILAKVNLTGF EEALAGHLSA GQHRRTALAR LQHSNCKIWI LDEPFTAIDK KGVEELEQLF
IQHAESGGCV ILTTHQDMSI ISDAMLRKIT LDYRFV
|
|---|
| |