Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0042 |
Symbol | |
ID | 4278249 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 54434 |
End bp | 55774 |
Gene Length | 1341 bp |
Protein Length | 446 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 638132783 |
Product | coproporphyrinogen III oxidase |
Protein accession | YP_748743 |
Protein GI | 114561230 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
TIGRFAM ID | [TIGR00538] oxygen-independent coproporphyrinogen III oxidase |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCGAAA AGTACAATTA CAGCGGTCCC CGTTATACTT CTTACCCGAC CGCACTAGAG TTTGACGATG CCTTTACTGA GCAAAACTTA CTGACATCTA TTAAAAACAG TAAGTCAGAT AAACTGTCGC TATATGTGCA TATTCCTTTT TGCGCCAAGC TTTGCTACTA CTGTGGTTGT AATAAAATTA TTACTCGCCA CTCTCACAAA GCAGATCAAT ACATTGAATA TCTGGCCACT GAGATTATTA AACGCGCCCC ATTATTCAAA AATTATACCG TAACCCAAAT GCATTGGGGT GGCGGTACAC CGACATTTTT AAGCCCTGAA CAAATTCTTA AACTGACCGC ATTAATTAAA CAACACTTTA ATTTTGCTGA TGTGGGTGAA TACTCAATTG AAGTTGACCC GCGTGAGATA GAGCTCAGCA TGTTAGACAC CTTAAAAGAA GCTGGGTTTA ACCGGGTATC TATTGGTGTT CAAGACTTTA ATAAAGAAGT ACAAATTGCC GTTAACCGTG AGCAAGACGA ACAATTTATT TTCGACTTAA TTGCCAGAGC TAAAGAACTC GGTTTTGTAT CAACGAACGT TGATTTAATT TACGGTTTAC CGCTGCAAAC GCCAGAAACG TTTGCGAAAA CTATTGCGCG CATTATTGAG CTATCGCCTG ATCGTCTATC TGTCTTTAAC TATGCACATT TACCATCGCG TTTTGCTGCA CAACGTAAAA TTAAAGAACA TGATATGCCT GCTCCACAAC AGAAATTAGA TATGCTTCGC CAAACGATAG AATCGTTAAC AGATGCGGGT TATCAATTTA TTGGTATGGA CCATTTTGCC AAACCCAATG ATGAGTTGGC AAAGTTACAA AATGCCGGCA AATTACATCG TAACTTCCAA GGGTACACCA CCCAAGAAGA ATGTGACTTG CTTGGGTTAG GGGTATCATC TATCAGCCAA ATTGGCGACT GCTATGCCCA AAATCAAAAA GATATTCGTC CATACTACGA ATCTATTGAT GCTAATGGTC ATGCATTATG GAAAGGCTGT AGCTTAAATC ACGATGATGA AATTCGTCGC GCGGTCATTA AACAGATTAT CTGTCATTTT GATTTAGACA TGGACAAAAT TGAACAAAAG TTTGCCATTA ACTTTGATGA ATATTTTGCT GAAGATCTTA AACTATTGCA AACATTCATA AATGATAAAT TGGTTGATAT CACTGATCGA AAGTTAACAG TAAGCCAGAC CGGTCGTCTA CTTATTCGTA ATATCTGCAT GTGTTTTGAT GTATATTATC GTCAGAAAGC CCGTCAGCAG CAGTTTTCAA GAGTTATTTA A
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Protein sequence | MIEKYNYSGP RYTSYPTALE FDDAFTEQNL LTSIKNSKSD KLSLYVHIPF CAKLCYYCGC NKIITRHSHK ADQYIEYLAT EIIKRAPLFK NYTVTQMHWG GGTPTFLSPE QILKLTALIK QHFNFADVGE YSIEVDPREI ELSMLDTLKE AGFNRVSIGV QDFNKEVQIA VNREQDEQFI FDLIARAKEL GFVSTNVDLI YGLPLQTPET FAKTIARIIE LSPDRLSVFN YAHLPSRFAA QRKIKEHDMP APQQKLDMLR QTIESLTDAG YQFIGMDHFA KPNDELAKLQ NAGKLHRNFQ GYTTQEECDL LGLGVSSISQ IGDCYAQNQK DIRPYYESID ANGHALWKGC SLNHDDEIRR AVIKQIICHF DLDMDKIEQK FAINFDEYFA EDLKLLQTFI NDKLVDITDR KLTVSQTGRL LIRNICMCFD VYYRQKARQQ QFSRVI
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