| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeHA_C4129 |
|---|
| Symbol | emrD |
|---|
| ID | 6492427 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011083 |
|---|
| Strand | + |
|---|
| Start bp | 4013922 |
|---|
| End bp | 4015082 |
|---|
| Gene Length | 1161 bp |
|---|
| Protein Length | 386 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 642744225 |
|---|
| Product | multidrug resistance protein D |
|---|
| Protein accession | YP_002047829 |
|---|
| Protein GI | 194448513 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00880] Multidrug resistance protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.771712 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 104 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTTGTTAA TGTTGGTGTT ACTGGTGGCC GTAGGGCAGA TGGCGCAAAC CATTTATATT
CCCGCCATCG CCGATATGGC ACAAGCGCTA AACGTCCGGG AAGGCGCCGT CCAGAGCGTA
ATGGCTGCTT ACCTCCTGAC CTACGGCGTC TCGCAACTGT TTTACGGCCC GCTTTCCGAC
CGGGTTGGGC GCCGCCCGGT AATCCTCGTC GGCATGTCTA TTTTTATGGT AGCGACTCTG
TTCGCCATGA CCACGCATAG TTTGACGGTG TTGATTGCCG CCAGCGCCAT GCAAGGGATG
GGAACCGGCG TTGGCGGAGT AATGGCGAGA ACGCTCCCGC GCGATCTGTA TGAAGGAACG
CAACTTCGTC ACGCCAATAG CCTGTTAAAT ATGGGGATTC TGGTCAGCCC GCTGTTAGCG
CCGCTGATTG GCGGCCTGCT GGATACCCTG TGGAACTGGC GCGCGTGTTA CGCTTTCCTG
CTGGTGCTTT GCGCTGGCGT CACCTTCAGC ATGGCGCGCT GGATGCCGGA AACCCGCCCC
GCCGGCGCGC CGCGCACACG GCTGATCGCC AGCTATAAAA CGCTGTTTGG CAACGGCGCA
TTTAACTGTT ACCTGCTGAT GCTAATCGGC GGGCTGGCTG GCATTGCGGT CTTTGAAGCC
TGTTCCGGCG TGCTGATGGG GGCAGTATTA GGTCTCAGCA GTATGGTGGT AAGCATTCTG
TTTATTCTGC CGATTCCGGC GGCGTTCTTC GGCGCCTGGT TTGCCGGACG CCCGAATAAA
CGCTTCTCAA CCCTGATGTG GCAGTCAGTT ATTTGCTGTC TGCTGGCAGG CCTTATGATG
TGGATTCCCG GCTGGTTTGG CGTGATGAAC GTCTGGACGC TACTCATCCC CGCTGCGCTG
TTTTTCTTCG GCGCCGGGAT GTTATTTCCA CTGGCCACCA GCGGCGCGAT GGAGCCGTTT
CCGTTCCTCG CAGGCACCGC TGGCGCGCTG GTCGGCGGGC TGCAAAATAT TGGTTCCGGC
GTACTGGCGT GGCTTTCGGC AATGCTGCCG CAAACCGGTC AGGGCAGTCT GGGACTGTTG
ATGACCCTTA TGGGATTGCT GATCCTGGCG TGCTGGCTGC CGCTGGCGTC ACGGATATCG
CATCAGGGGC AGACGGTTTA A
|
|---|
| Protein sequence | MLLMLVLLVA VGQMAQTIYI PAIADMAQAL NVREGAVQSV MAAYLLTYGV SQLFYGPLSD
RVGRRPVILV GMSIFMVATL FAMTTHSLTV LIAASAMQGM GTGVGGVMAR TLPRDLYEGT
QLRHANSLLN MGILVSPLLA PLIGGLLDTL WNWRACYAFL LVLCAGVTFS MARWMPETRP
AGAPRTRLIA SYKTLFGNGA FNCYLLMLIG GLAGIAVFEA CSGVLMGAVL GLSSMVVSIL
FILPIPAAFF GAWFAGRPNK RFSTLMWQSV ICCLLAGLMM WIPGWFGVMN VWTLLIPAAL
FFFGAGMLFP LATSGAMEPF PFLAGTAGAL VGGLQNIGSG VLAWLSAMLP QTGQGSLGLL
MTLMGLLILA CWLPLASRIS HQGQTV
|
|---|
| |