Gene SeHA_C1340 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeHA_C1340 
SymbolsifA 
ID6489929 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Heidelberg str. SL476 
KingdomBacteria 
Replicon accessionNC_011083 
Strand- 
Start bp1314184 
End bp1315194 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content41% 
IMG OID642741575 
Productsecreted effector protein 
Protein accessionYP_002045225 
Protein GI194450062 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones64 
Fosmid unclonability p-value0.187577 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGATTA CTATAGGGAA TGGTTTTTTA AAAAGTGAAA TCCTTACCAA CTCCCCAAGG 
AATACGAAAG AAGCATGGTG GAAAGTTTTA TGGGAAAAAA TTAAAGACTT CTTTTTTTCT 
ACTGGCAAAG CAAAAGCGGA CCGTTGTCTA CATGAGATGT TGTTTGCCGA ACGCGCCCCC 
ACACGAGAGC GGCTTACAGA GATTTTTTTT GAGTTGAAAG AGTTAGCCTG CGCATCGCAA 
AGAGATAGAT TTCAGGTTCA TAATCCTCAT GAAAATGATG CCACCATTAT TCTTCGCATC 
ATGGATCAAA ACGAAGAGAA CGAATTGTTA CGTATCACTC AAAATACCGA TACCTTTAGC 
TGTGAAGTCA TGGGGAATCT TTATTTTTTA ATGAAAGATC GCCCGGATAT TTTAAAATCG 
CATCCACAAA TGACGGCCAT GATTAAGAGA AGATATAGCG AAATCGTAGA CTACCCCCTC 
CCTTCGACAT TATGTCTCAA TCCTGCTGGC GCGCCGATAT TATCGGTTCC ATTAGACAAC 
ATAGAGGGGT ATTTATATAC TGAATTGAGA AAAGGACATT TAGATGGGTG GAAAGCGCAA 
GAAAAGGCAA CCTACCTGGC AGCGAAAATT CAGTCCGGGA TTGAAAAGAC AACGCGCATT 
TTACACCATG CGAATATATC CGAAAGTACT CAGCAAAACG CATTTTTAGA AACAATGGCG 
ATGTGTGGAT TAAAACAGCT TGAAATACCA CCACCGCATA CCCACATACC TATTGAAAAA 
ATGGTAAAAG AGGTTTTACT AGCGGATAAG ACGTTTCAGG CGTTCCTCGT AACGGATCCC 
AGCACCAGCC AAAGTATGTT AGCTGAGATA GTCGAAGCCA TCTCTGATCA GGTTTTTCAC 
GCCATTTTTA GAATAGACCC CCAGGCTATA CAAAAAATGG CGGAAGAACA GTTAACCACG 
CTACACGTTC GCTCAGAACA ACAAAGCGGC TGTTTATGTT GTTTTTTATA A
 
Protein sequence
MPITIGNGFL KSEILTNSPR NTKEAWWKVL WEKIKDFFFS TGKAKADRCL HEMLFAERAP 
TRERLTEIFF ELKELACASQ RDRFQVHNPH ENDATIILRI MDQNEENELL RITQNTDTFS 
CEVMGNLYFL MKDRPDILKS HPQMTAMIKR RYSEIVDYPL PSTLCLNPAG APILSVPLDN 
IEGYLYTELR KGHLDGWKAQ EKATYLAAKI QSGIEKTTRI LHHANISEST QQNAFLETMA 
MCGLKQLEIP PPHTHIPIEK MVKEVLLADK TFQAFLVTDP STSQSMLAEI VEAISDQVFH 
AIFRIDPQAI QKMAEEQLTT LHVRSEQQSG CLCCFL