Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A3991 |
Symbol | |
ID | 6875494 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | - |
Start bp | 3831489 |
End bp | 3833495 |
Gene Length | 2007 bp |
Protein Length | 668 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 642786947 |
Product | putative phosphodiesterase |
Protein accession | YP_002217575 |
Protein GI | 198242458 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 54 |
Fosmid unclonability p-value | 0.185818 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGCGCGTCA GCCGCTCGTT AACAATTAAA CAGATGGCAA TGGTTGCGGC CGTTGTCATG GTGTTTGTTT TTGTCTTTTG CACCGTTTTG TTGTTCCATC TGGTACAGCA GAACCGCTAC AACACGGCTA CGCAACTGGA AAGCATCGCG CGATCTGTTC GGGAACCTCT TTCTTCCGCG ATTTTAAAAG CGGATCTCCC CGGCGCGGAA ACCATTCTGG AAAGTATTAA ACCTGCGGGC GTGGTGAGTC GCGCCGATGT GGTATTGCCG AATCAGTTCC AGGCGTTGCG TAAGCGCTTC ATTCCTGAAC GCCCCGTCCC GGTTATGGTG ACGCGTCTCT TCGAACTGCC GGTACAAATT TCTTTGCCGG TTTATTCGCT GGAGCGTCCC GCCAATCCGC AACCGCTGGC CTACCTTGTA TTGCAGGCGG ATTCGTACCG TATGTACAAG TTCGTCATGA GCGCGCTCTC TACGTTAGTG ACCATTTACT TACTTTTATC GCTGATCCTG ACGGTGGCCA TCGCCTGGTG CGTAAACCGC CTGATTGTGC ATCCGCTGCG CAAAATCGCC CGCGAGCTGA ACGACATTCC GCAGCAGGAG CTGATCGGAC ATCAGCTGGC GTTGCCGCGT CTGCATCAGG ATGATGAAAT TGGAATGCTG GTGCGCAGCT ATAACCTCAA CCAGCAGCTT ATGCAGCGTC AACGCGAGGA GCAAACGGAC AACGCGATGC GTTTTCCGGT TTCCGAGCTG CCCAATAAAG CCTTTTTAAT GGCATTGCTG GAACAGGTTA TCGCCCGCCA ACAGACCACC GCGCTTATCA TCGTGACGTG CGAAACGTTG CGTGACACGG CAGGCGTGCT GCAAGAAACG CAGCGGGAGA TTCTATTACT GACGCTGGTT GAGAAGCTGA AGTCGGTGCT GGCGCCGCGC ATGGTGCTTA CGCAGGTCAG CGGGTATGAC TTCGCCATTA TCGCCCACGG CGTTAAAGAG CCGTGGCACG CCATCACATT AGGTCAGCAA ATACTCACTA TCATTAATGA ACGACTGCCC ATCCAGGGTA TTCAACTGCG CCCAAGCTGC AGTATTGGCA TTGCGATGTA TTATGGCGAT CTGACCGCCG AAGCGCTCTA TGGTCGCGCC GTTTCCGCCG CGTTTACCGC GCGCCGAAAA GGTAAAAATC AGATCCAGTT CTTTGACCCG GCGCAGATGG AGGCCGCTCA ACAGCGCCTT ACCGAAGAGA GCGATATCCT TACCGCGCTG GATAACCATC AGTTTGCCAT TTGGTTGCAG CCGCAGGTCG AGATGCGCAG CGGCAACGTA TTAAGCGCCG AAGCCTTGTT ACGTATGCAA CAGCCGGACG GTAGCTGGGA ATTGCCGGAG GGGCTGATTG AGCGCATTGA ATCCTGCGGC CTGATGGTCA CGGTGGGCCA TTGGGTGCTG GAAGAGTCCT GCCGCCAGCT TGCCGCCTGG CAGGAGCGCG GCGTGACATT GCCGCTCTCC GTCAATCTTT CCGCGTTACA GCTCATGCAC CCTGGCATGG TGTCGGATCT GCTGGAATTG TTAAATCGCT ATCGTATTCA ACCGGGTACG CTGATTCTTG AGGTCACTGA AAGCCGCCGT ATCGACGATC CGCACGCTGC CGTCGCTATC TTACGTCCGT TACGTAATGC TGGCGTGCGT ATCGCACTGG ATGATTTTGG CATGGGTTAC GCGGGGCTGC GCCAGTTACA GCATATGAAG TCGCTACCGG TCGATATCCT TAAAATTGAT AAAATGTTTG TCGATGGGTT ACCGGATGAT CACAGTATGG TGACGGCGAT TATTCTGATG GCCCGCAGTC TTAATTTACA ATTGATTGCC GAGGGCGTGG AGAACGAGGC GCAACGCGCG TGGCTGGAAC AGGCGGGAGT CAACGTCGCG CAAGGCTTCC TGTTTGCTCG GCCCGTTCCC GCGGATATCT TTGAAGAACG GTATCTGTCG CACGAAAATT CTGATTACAA AAGTTAA
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Protein sequence | MRVSRSLTIK QMAMVAAVVM VFVFVFCTVL LFHLVQQNRY NTATQLESIA RSVREPLSSA ILKADLPGAE TILESIKPAG VVSRADVVLP NQFQALRKRF IPERPVPVMV TRLFELPVQI SLPVYSLERP ANPQPLAYLV LQADSYRMYK FVMSALSTLV TIYLLLSLIL TVAIAWCVNR LIVHPLRKIA RELNDIPQQE LIGHQLALPR LHQDDEIGML VRSYNLNQQL MQRQREEQTD NAMRFPVSEL PNKAFLMALL EQVIARQQTT ALIIVTCETL RDTAGVLQET QREILLLTLV EKLKSVLAPR MVLTQVSGYD FAIIAHGVKE PWHAITLGQQ ILTIINERLP IQGIQLRPSC SIGIAMYYGD LTAEALYGRA VSAAFTARRK GKNQIQFFDP AQMEAAQQRL TEESDILTAL DNHQFAIWLQ PQVEMRSGNV LSAEALLRMQ QPDGSWELPE GLIERIESCG LMVTVGHWVL EESCRQLAAW QERGVTLPLS VNLSALQLMH PGMVSDLLEL LNRYRIQPGT LILEVTESRR IDDPHAAVAI LRPLRNAGVR IALDDFGMGY AGLRQLQHMK SLPVDILKID KMFVDGLPDD HSMVTAIILM ARSLNLQLIA EGVENEAQRA WLEQAGVNVA QGFLFARPVP ADIFEERYLS HENSDYKS
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