Gene SeD_A3250 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3250 
Symbolcse3 
ID6872335 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp3122558 
End bp3123208 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content57% 
IMG OID642786265 
Productcrispr-associated protein, Cse3 family 
Protein accessionYP_002216906 
Protein GI198244792 
COG category 
COG ID 
TIGRFAM ID[TIGR01907] CRISPR system CASCADE complex protein CasE/Cse3 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.149131 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones66 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTATCTCT CAAGAATAAC GCTGCACACC AGCGAGCTTT CGCCGGCACA GCTCTTGCAT 
CTGGTGGAGC GCGGCGAGTA CGTGATGCAC CAGTGGTTAT GGGATCTCTT TCCCGGCAGC 
AAGGAACGGC AGTTTCTTTA TCGCCGCGAA GAGTTACAGG GCGCGTTTCG CTTTTTTGTT 
CTCTCACAGG AACAGCCTGC CGCCAGCGCG ATTTTTGACG TGCAGACTCG CCCATTTGCG 
CCAACGCTGA GCGCGGGGCA GACGCTGCGG TTTAACCTGC GCGCCAATCC GACGGTTTGC 
AAAAACGGCA AGCGTCACGA TTTGCTGATG GAGGCGAAAC GCCAGCGTAA AACGCAGGGT 
GATAGCCAGG ATATTTGGTC TTATCAGCAG CAGGCGGCGC TGACGTGGTT GGCGCGCCAG 
GGGGAGCAAA ATGGCTTCAC CCTGCGCGAA ACGAGCGTTG ATGCTTATCG GCAGCAGCAG 
ATACGTCGAG AGAAATCCCG GCAGATGATT CAGTTTAGCA GCGTGGACTA TACCGGCGTG 
CTGGTGCTTA ACGATCCCGT GCTTTTCCTG CAACGTCTGG CGCAGGGGTA CGGTAAAAGC 
CGGGCGTTTG GCTGCGGAAT GATGATGATC AAACCCGGAG ACGACGCGTG A
 
Protein sequence
MYLSRITLHT SELSPAQLLH LVERGEYVMH QWLWDLFPGS KERQFLYRRE ELQGAFRFFV 
LSQEQPAASA IFDVQTRPFA PTLSAGQTLR FNLRANPTVC KNGKRHDLLM EAKRQRKTQG 
DSQDIWSYQQ QAALTWLARQ GEQNGFTLRE TSVDAYRQQQ IRREKSRQMI QFSSVDYTGV 
LVLNDPVLFL QRLAQGYGKS RAFGCGMMMI KPGDDA