| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A3027 |
|---|
| Symbol | |
|---|
| ID | 6873202 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | - |
|---|
| Start bp | 2924924 |
|---|
| End bp | 2927731 |
|---|
| Gene Length | 2808 bp |
|---|
| Protein Length | 935 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 642786058 |
|---|
| Product | phage tail tape measure protein |
|---|
| Protein accession | YP_002216704 |
|---|
| Protein GI | 198244813 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5283] Phage-related tail protein |
|---|
| TIGRFAM ID | [TIGR01760] phage tail tape measure protein, TP901 family, core region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 0.000444183 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGACA ATAACCTGCG TCTGCAGGTG ATTCTTAATG CGGTTGACAA GCTCACCCGC
CCATTTCGAT CCGCGCAGGC CAGCTCAAAA GAGCTGGCTG CAGCCATTCA GCAAAGCCGC
GCCCGTTTAA AAGAATTAGA TGCTCAGGCG GGCCGCATTG ACGGTTTCCG CAAGGCCAGC
GCGCAGCTGG CAGTCACCGG TAACAGCCTG AAAGCCGCAC GCGAAGAAGC TGCGAAACTT
GCCACGCAAT TCTCTGCCAC CAACCGCCCG ACGGCGGCGC AGGCACGGCT GCTTGAGCAG
GCAAAAAACC GCGTTACGGA GTTACAGAGC AAATATAACG GTCTACGTCA GTCGGTGCAG
CGCCAGCGTC TTGCGCTCAA TGAAGCCGGA CTGGACACGA AAAAGCTCAG TAGTGCGCAG
CGGGAACTGC GGCAGAATGC CGACGAAACC CGGCAGGCCC TGGACCGGCA GCAGAAATCC
CTTAAAAGCT TGGGCGAACA GCAGGCGCGA ATGAACGCCG TCCGCGATCA GTATTCGCGC
CGTCTTGAGG TGCGGGATCG CATCGCCGGG GCAGGGGCTA CCACTACGGC TGCAGGGGGG
GCAATGGGCG CACCTGTTGT GGCGGCAGTT AAGAGCTACG CCAGCATGGA AGATGCCATG
AAAGGTGTGG CAAAGCAGGT AAACGGGCTG CGGGACGATA ATGGCAACCG CACAAAACAG
TTTTATGACA TGCAGGATGC CATCAAGGCC GCCAGCGAAC AGCTACCGAT GGAGAACGGC
GCTATAGACT ATGCCGCGCT GGTTGAAGGT GGTGCTCGCA TGGGGGTGAC CAATCAGGAC
GATCCTTACG AAGAGCAGAA ACGTGACCTG CTGGCTTTTG CATCCACGGC GGCAAAAGCG
GCAACGGCCT TTGAGCTGCC CGCAGATGAA CTGGCAGAAG GACTGGGGAA AATCGCGCAG
CTCTATAAAG TTCCGACGCG CAATATTGAA CAACTGGGCG ATGCGCTGAA CTACTTGGAC
GATAACGCCA TGTCAAAGGG TGGGGACATT ATCAACGTCC TGCAGCGTAT GGGGGGCGTG
GCTGACCGCC TTGACTTCCG AAAGGCCGCG GCGCTGGGTT CAACATTCCT TTCTCTTGGG
GCTGCCCCGG AAATCGCCGC CAGCGCCTCT AATGCCATGG TGCGTGAACT GTCCATTGCT
ACCATGCAAA GTAAACGATT TTTTGAAGGC ATGAATCTGT TGCAACTCAA TCCGGCGGAG
ATTGAAAAGC AGATGACCAC CGATGCCATG GGCACAATTC AGCGGGTTCT GGAGAAGGTC
AACAATCTGC CGCAGGATAA ACGCTTGTCA GCCATGACAA TGATTTTTGG CAAAGAGTTT
GGCGATGATG CGGCAAAGCT GGCTAACAAC CTGCCGGAGC TGCAGCGCCA GCTGAAACTC
ACATCAGGTA GTGGTGCTAA TGGCTCTATG CAGAAAGAAT CCGACATTAA CAAGGATTCA
TTGTCTGCGC AGTGGTTGCT GGTTAAGACG GGCGCGCAGA ACGCTTTCAG CAGCCTGGGG
GAAACGTTGC GCCAGCCGCT GATGGATATT ATGGGCATGG TTAAGCGCGT GACCGGGGCG
TTGCGTCGCT GGGTTGAACA GAATCCCGTG CTGGCTGGCA CGCTGATGAA AGTGGCGGCA
GCTACGGCAG CCATTACTGT TGGGTTGGGG GCGCTGGCAG TGGCGGTGGC TGCGGTACTA
GGGCCGCTGG CGGTTATCCG GTTTGGCCTG TCAATGCTGT CAGTTAAAGC GTTACCTTCT
GCAGCCGCCG CTGCCACACG TACAGGTAGC GTGCTGCGTT TGTTGATCTC TGGTCCGCTG
GCTTTGCTGC GCGTGGCATT ATTTGCTGTT GGTAGCCTGC TGGGTGCGCT GCTCAGTCCT
GTAGGGCTGG TTGTGGCTGC ACTGGCAGGC GTGGCGCTGG TTATCTGGAA ATACTGGCAG
CCCATTAGTG CATTTCTGGG GGGCGTGGTG GAAGGGTTCA GAGCCGCTGC TGCGCCCATC
AGCGCCGCCT TTGAGCCGCT CAGACCCGTG TTTCAGTGGA TTGGTGACAG GGTGCAGGCC
TTGTGGGGCT GGTTCAATGA TTTACTTACC CCGGTTAAAT CCACTTCCGA AGAACTGAAC
AGCGCAGCTG CAATGGGGCG TCGGTTTGGT GAGGCGCTGG CGGAAGGTCT GAATATGGTG
ATGCACCCAC TTGAGTCACT TAAATCCGGT GTGTCATGGC TGCTGGAAAA GCTCGGTATT
GTCAGTAAGG AGGCGGCAAA GGCGAAACTA CCTGCGCAGG TTACGCAGCC GCAGTCCGCC
ACAGTGAACA GTGACGGCAA AGTGGTGCTG CCGCCAGGCG GGTTCCCGGC TTACGCGGGG
ATGTATGACA CGGGCGGGAT CATTCCACGC GGGCAGTTTG GCATTGTCGG AGAAAATGGC
CCTGAAATTG TGAACGGACC GGCAAATGTT ACCAGCAGGC GGCGTACTGC TGCACTGGCC
TCTGTCGTTG CTGGCGTGAT GGGGGGAGCT GCGACACCTG CAGAAGCGGC TCCGCTTCAT
CCGTTCAGTT TGCCTGCGAG GGCATACCAG CCCCCGCTTG CTAAGGCAGA TAGCCCGCCG
CCGGTTATTC GTTATGAGAT AAATGCGCCC ATTCATATTG TCGCTCAGCC TGGGCAGAAC
GCGCAGGATA TTGCCCGTGA AGTGGCACGC CAGCTTGACG AACGGGAGCG CCGGGCCAGG
GCAAAAGCAC GCAGCAATTT CAGCGATCAG GGGGGGTATG AATCATGA
|
|---|
| Protein sequence | MSDNNLRLQV ILNAVDKLTR PFRSAQASSK ELAAAIQQSR ARLKELDAQA GRIDGFRKAS
AQLAVTGNSL KAAREEAAKL ATQFSATNRP TAAQARLLEQ AKNRVTELQS KYNGLRQSVQ
RQRLALNEAG LDTKKLSSAQ RELRQNADET RQALDRQQKS LKSLGEQQAR MNAVRDQYSR
RLEVRDRIAG AGATTTAAGG AMGAPVVAAV KSYASMEDAM KGVAKQVNGL RDDNGNRTKQ
FYDMQDAIKA ASEQLPMENG AIDYAALVEG GARMGVTNQD DPYEEQKRDL LAFASTAAKA
ATAFELPADE LAEGLGKIAQ LYKVPTRNIE QLGDALNYLD DNAMSKGGDI INVLQRMGGV
ADRLDFRKAA ALGSTFLSLG AAPEIAASAS NAMVRELSIA TMQSKRFFEG MNLLQLNPAE
IEKQMTTDAM GTIQRVLEKV NNLPQDKRLS AMTMIFGKEF GDDAAKLANN LPELQRQLKL
TSGSGANGSM QKESDINKDS LSAQWLLVKT GAQNAFSSLG ETLRQPLMDI MGMVKRVTGA
LRRWVEQNPV LAGTLMKVAA ATAAITVGLG ALAVAVAAVL GPLAVIRFGL SMLSVKALPS
AAAAATRTGS VLRLLISGPL ALLRVALFAV GSLLGALLSP VGLVVAALAG VALVIWKYWQ
PISAFLGGVV EGFRAAAAPI SAAFEPLRPV FQWIGDRVQA LWGWFNDLLT PVKSTSEELN
SAAAMGRRFG EALAEGLNMV MHPLESLKSG VSWLLEKLGI VSKEAAKAKL PAQVTQPQSA
TVNSDGKVVL PPGGFPAYAG MYDTGGIIPR GQFGIVGENG PEIVNGPANV TSRRRTAALA
SVVAGVMGGA ATPAEAAPLH PFSLPARAYQ PPLAKADSPP PVIRYEINAP IHIVAQPGQN
AQDIAREVAR QLDERERRAR AKARSNFSDQ GGYES
|
|---|
| |