Gene SeD_A1705 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1705 
Symbol 
ID6873046 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp1642545 
End bp1643276 
Gene Length732 bp 
Protein Length243 aa 
Translation table11 
GC content44% 
IMG OID642784845 
ProductABC transporter ATP-binding protein 
Protein accessionYP_002215513 
Protein GI198244296 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1126] ABC-type polar amino acid transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.113372 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones47 
Fosmid unclonability p-value0.00997988 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCTTTAC TGAAACTAAA AGAGATAAGT AAGGAATATT CAGGAAAAAA GGTTCTTGAT 
ACGGTTAGTC TGAAAATTCA ATCGGGAGAC ATGAAAGTAG TCATGGGGCC ATCAGGTTGT
GGAAAAACGA CGCTTTTACG CTGTCTGCTT CGATTAGAAG AACCTGATTA TGGCAATATT
TATTTTCACG GGAAAAATAT TTACGACAAA GAATTTACTA TTCTTGAGTT CAGAAAAAAA
GTTGGTTGTG TCTTCCAGAA TTACGCTTTG TATCGCCATC TTAACGTCAT GGATAATATT
ACCCTTGCCC TATGTAAAGT GTTTGGCATG CCGGGACAAC TAGCCCGGGA GAAAGCCTTA
CATGAGCTAC AAAAACTTGA TATGGCCTCG CATAGCGCGA AATACCCTTC GCAATTATCG
GGCGGCCAGC AACAGCGCGT CGCCCTGGCC CGTACAATGG TCACCGACCC AGAACTCATT
ATTTTTGATG AGCCGACGTC TGCGCTTGAT CCGCTCATGA CTCGTGAAGT CGGAATGTTG
ATCAAGCAAC TTCACGACAA TGGCGTCACT ATATTATGCG TCACTCATGA TATTCGCCTC
GCCAGATTAC TAAGCGATAA CGTAACGTTT CTTAATCATG GCAAGATTCG TGCAGAAGGC
GCTTTTACCG ATCTTGCCTT ACGAGAAACG GATCCAGATA TCCACTGTTT TTTTAGCGAG
GCACAACGAT GA
 
Protein sequence
MALLKLKEIS KEYSGKKVLD TVSLKIQSGD MKVVMGPSGC GKTTLLRCLL RLEEPDYGNI 
YFHGKNIYDK EFTILEFRKK VGCVFQNYAL YRHLNVMDNI TLALCKVFGM PGQLAREKAL
HELQKLDMAS HSAKYPSQLS GGQQQRVALA RTMVTDPELI IFDEPTSALD PLMTREVGML
IKQLHDNGVT ILCVTHDIRL ARLLSDNVTF LNHGKIRAEG AFTDLALRET DPDIHCFFSE
AQR