Gene SeD_A1304 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1304 
Symbol 
ID6874057 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp1283859 
End bp1285292 
Gene Length1434 bp 
Protein Length477 aa 
Translation table11 
GC content49% 
IMG OID642784472 
Productputative cell wall-associated hydrolase 
Protein accessionYP_002215142 
Protein GI198245810 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0258474 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.00000040862 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCAAAAGA AAACCTGGGC CGTTTTATTG ATACCATTGT GCCTCACCGC TTGCCACCAG 
ACGACCTACC GATCAACAGC CAAAGATGAA ATTGTCGCAG GGAGCTATAT TGACCCGACA
AAAACACGCT TTCCGTTAGC GGATTATTCA CAGTCGGTTG ATAAATGGAT ACCTCCGGAC
TCGGCTGATT ACACTATTCC GGTTATTGAT AGTGCTACCC AACAACGCTA CTTTCACGCA
CTAAAATCTC ATTATTTCGG AATGGACAGT GAAGCGCACT CGCCGTGGAA TGGTTTTTAT
ATTACCGCAT TGCTGAAAAA AAATGCAGCA CAGGCCCGGG ATGCCAGTAT TAAGCAGTTT
CTTAGCGACG GCAGTGCTTA TTGGGGGGAA AACTTCAGAC TTTATACCTC TCGCTGGAAA
GAGGAGGTTA GAGGGAATAC GGATACGCAG ATTGACAATA TCTATCATGC CTCCCGGCGA
GGCATTATGG TCAGAGAAAG TTTAGTCAGA GCGCTGCCAA CGGACGACCC GCTCTTTAAC
GATCCCCGTC AGGCAGGCGA GGGGTATCCG TTTGATAATT TACAAATGTC TTCGCTGCGT
CCCGGTACGC CGGTCTATAC GCTGACGAAG AGCAAAGACC AACGCTGGCA ATATGTCGTT
TCACCAGCGG TAACTGGCTG GGTTCATAGT GAAGATATTG CCAGTACGGA TCAGAAATTT
ATAACACAGT GGGTTTTGCT TGCTCATAAG CAACTGGGGG CATTTATCAA CGCGCCGGTT
TCTGTCCATG CCGCAGGCGT CTATTATTTC ACCGGGCGCC CGGGCACTAT TTTACCGTTC
CGACATCAAC GGGCGGGCCA GTTCCTGATT GCGGCGCCAG TTCGCGATAG CAACGGTCGC
GCGTCTATCC ATTGGGTCTG GCTAAGCGGT AACGAGTTTA CGGCTATGCC GTGGAAAATG
ACGCCGGAAA ATATCGCTGT GCTAATGAAA GCAATGCACG GCGCCCCCTA CGGTTGGGGA
AATTTTAACT TTTATAATGA TTGTTCAGCC GAAGTCCGCA GCCTGTTAAT GCCGTTTGGC
ATATTCCTGC CCAGACATTC ATCCGCGCAG GTAGAGGCTG CTGGACGGGT GGTCGATCTT
AGTCATAAAA ATCCCCAAAT GCGGATCGAT TATCTCACCA GATACGGAAA AGCGTTTACT
ACGCTGGTCT ATATTCCAGG GCATATTATG CTGTATATCG GTAACACAAC CATGAATGGG
CAGGTCGTGC CGATGTCTTA TCAGAATATC TGGGGATTGC GCCCAAACCA TGCTAATAGC
CGGAGCATTA TCGGTGAGGC GGTATTTTTG CCGTTACTGC GTTTTTATCC TGAAAATCCT
GAGCTGATAT CGCTGGCTGG TAAGGTTCTG TTTAAGCTTG GTTATATAGA ATAG
 
Protein sequence
MQKKTWAVLL IPLCLTACHQ TTYRSTAKDE IVAGSYIDPT KTRFPLADYS QSVDKWIPPD 
SADYTIPVID SATQQRYFHA LKSHYFGMDS EAHSPWNGFY ITALLKKNAA QARDASIKQF
LSDGSAYWGE NFRLYTSRWK EEVRGNTDTQ IDNIYHASRR GIMVRESLVR ALPTDDPLFN
DPRQAGEGYP FDNLQMSSLR PGTPVYTLTK SKDQRWQYVV SPAVTGWVHS EDIASTDQKF
ITQWVLLAHK QLGAFINAPV SVHAAGVYYF TGRPGTILPF RHQRAGQFLI AAPVRDSNGR
ASIHWVWLSG NEFTAMPWKM TPENIAVLMK AMHGAPYGWG NFNFYNDCSA EVRSLLMPFG
IFLPRHSSAQ VEAAGRVVDL SHKNPQMRID YLTRYGKAFT TLVYIPGHIM LYIGNTTMNG
QVVPMSYQNI WGLRPNHANS RSIIGEAVFL PLLRFYPENP ELISLAGKVL FKLGYIE