Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_3352 |
Symbol | |
ID | 4019900 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | - |
Start bp | 3993595 |
End bp | 3995568 |
Gene Length | 1974 bp |
Protein Length | 657 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637957405 |
Product | regulatory protein CsrD |
Protein accession | YP_564351 |
Protein GI | 91794700 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAGCTCA CTAAAATTCT TACAAAAAAA CTGACTAGCT TTTGGCTACT GTCGCTGATG GCGGTTGCCT GTGTATTTTT ACTTTGCGCC GGCATCAGTT TTATTCAACT CACCTACAAG TTTCAGCAGC AACAGGTGAA AGATTTTAAT ACCTTAATGA CCCAACAAGT GCAGCACTTT AGCCACTTAG AAAACGCGGC CATTAACCAA GTACAGCGAG ATGACGAACA AGGGCGTTCT CAAGCACAGT TGGCCCATTG GTTACCGCAG CTCTTGGCTA ATTATCACAC TGTGGAGTTT CGCTTATTTG AGGGCGATAA GCTTAGGTAC AGTTACAATA ATGGTGCCAA TCTGCAACAG GGGGTACGCT ACAAACAGGC CTTAGACGGG CATTGGCGTA TGGAGCTTGT GCTGGTGGCG CCATTTTATT TACACGCGTT AAGTTGGCAA GAGTACTGGG TGTTATTGAT AGGTTTTGCC GCTATTTTTG CCCTCGTCTT CTACGGTCAG CGCTGGTTTG CCCAAGAGCT TGATGGGGTC GAGGAGCTTG CGATGCGCAG TCATCTCATC TTAGATGGTA AGCTTGAGCA AGCCTTAGCC AGTGCCGGCA GCGGCAAACC TAGGCTTATC AATCGTGCCC TGACTCGTTT GTTGGAGCAG TTACAAGATG CTCAGCGAGA GCGTGGCCGA TTTGATAAAT TTATTCGCTC CAATGTGTTT CTCGACCCTC AAACCCGCAT AGGTAATCAG CTATTTTTCG TGAATCGTCT CGATGGACTC AGCCAAGATC AGCAGATGAT TTCCCATGGG GCTATGTACC TTATTGACTT TGCCGATCTG GACATAGCTC AACAAGAAAA AGGCGATCAG TTTATTGCGG ATTTCTTAAC CCAGTTGGTT AACAGTGTGA ACCAGGCCTT AACTGAGCAT GTGGACAGTA TTTTTAGCCG CAGAAGTTTT CAGCAGTTCG CCATAGTGGT GCCTCAGCTG TCGTTAACTG AGGCGGACTC ACTGGCCAAT AAATTGCTAA AAATTTGCAT CAGTCAGGCG GGTAAAGATT TTCCTAATCA AGATAATTTC GTCCACTTAG GGGCCGCCTT TTATCGGGCT GGGGATAATC AACAGCAATT GCTCGAAGAA GCCGATATGG CGCTTAAAGC CGCGCAGTTA CAAAGAAGCA ATAATTGGTT TATGTATGAT AAGGGCGCGG TGGATGAAGA GATTGCCAAA GGCTCGGTGC GCTGGCGAAG TTTCTTGGAA TCAAGCTTAC TCAATAAGCG GGTGATAAGT TTTTCTCAAG GGGTGTTTGA TAGCGATAAT ACGCTACATC ACCATGAGGT CTTCAGCCGT ATTCGTGATA ATCAAGGCAA GGATGTGCGC GCGACCTTAT TTATCCCCAT GGCCAATAAG TGCGGCCTGA TGCCGCAAAT TGAGCGGCAG CTGCTGGAGC GAGTATTTTT TACCTTAATG CCCCAAAGCC AAGCTAATTA CAGTGTGAAC TTAAGCTTAG ACTCTCTTAC TAGCCGCGCC TTTATGCGCT GGCTCAAGAC TCTATTATTA GAGCACAGGC CTTTAGCCAC CCGGCTTATT TTTGAAATAT CAGAAGATAT TATTGTTAAA CACCAGAGCA AGTTGACCAC ACATTTAGAC ATGTTGAAAA AAATGGGCGC TAAACTGTGT GTCGACCACG TAGGACAACA AGTGGTGGGT ACACATTATA TCCAAGAATG TGATTTTGAT TTTGTGAAGT TGCATAAATC TATCATTCGA AAAATCCATT TACGCTCAGA AAATCAATTA TTTATAAGAA GCTTTATTGG CGGTTTATAC CGCGCCGAAG TGCAAGTGTT TGCCGAGGGA GTAACAAGCT TCGAAGAATG GCAAACCTTA AAGATTTTAG GTGTGAGCGC CGCACAAGGT GAATTTCTCG GTGAAGTACA AGAAGCTAAT TACACTGTGA ATGTTTCTAA ATAG
|
Protein sequence | MKLTKILTKK LTSFWLLSLM AVACVFLLCA GISFIQLTYK FQQQQVKDFN TLMTQQVQHF SHLENAAINQ VQRDDEQGRS QAQLAHWLPQ LLANYHTVEF RLFEGDKLRY SYNNGANLQQ GVRYKQALDG HWRMELVLVA PFYLHALSWQ EYWVLLIGFA AIFALVFYGQ RWFAQELDGV EELAMRSHLI LDGKLEQALA SAGSGKPRLI NRALTRLLEQ LQDAQRERGR FDKFIRSNVF LDPQTRIGNQ LFFVNRLDGL SQDQQMISHG AMYLIDFADL DIAQQEKGDQ FIADFLTQLV NSVNQALTEH VDSIFSRRSF QQFAIVVPQL SLTEADSLAN KLLKICISQA GKDFPNQDNF VHLGAAFYRA GDNQQQLLEE ADMALKAAQL QRSNNWFMYD KGAVDEEIAK GSVRWRSFLE SSLLNKRVIS FSQGVFDSDN TLHHHEVFSR IRDNQGKDVR ATLFIPMANK CGLMPQIERQ LLERVFFTLM PQSQANYSVN LSLDSLTSRA FMRWLKTLLL EHRPLATRLI FEISEDIIVK HQSKLTTHLD MLKKMGAKLC VDHVGQQVVG THYIQECDFD FVKLHKSIIR KIHLRSENQL FIRSFIGGLY RAEVQVFAEG VTSFEEWQTL KILGVSAAQG EFLGEVQEAN YTVNVSK
|
| |