| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3184 |
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| Symbol | |
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| ID | 4019710 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 3816692 |
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| End bp | 3818284 |
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| Gene Length | 1593 bp |
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| Protein Length | 530 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637957234 |
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| Product | glucose-methanol-choline oxidoreductase |
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| Protein accession | YP_564183 |
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| Protein GI | 91794532 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.275768 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAGTATTA GTGATCCCAT AGAGAATGGT CTTAAAGGCG GCTGGTTGCA TATTGATGCC
AGTACCTTGC AGGTCTCGCG GCACTTTGAG GCCGATGTCG TCATCGTTGG CACGGGTGCA
GGCGGTGGGG TCGCCGCTGA TATTCTCACT CAGGCTGGGC TTAAGGTGAT AATGATAGAG
GCGGGGGCGC TTAAATCTTC TAAAGATTTT GATATGGAAG AGCGTACCGC TTACCCGAAT
CTTTATCAGC AGGCGGCCTC GATGAAAACC GCCGATAAAG GCATTAGTAT TTTTCAAGGC
CGTACAGTCG GCGGTGCTAC CACCATTAAC TGGACCACAT CCATTCGCAC ACCTGAGCCA
ACCTTAGACT TTTGGGCCAA GGAAAAATCT GTCGTTGGTT TGGATACGCA GAGCCTTGCC
CCTTGGTTTG ATACTATGGA GCAGCAACTT AATATCAGCA CTTGGTTGTA TGAACCTAAT
CGCAACAATG GTGCCTTGCT CGAAGGCTGT AACAAGCTGG GTTGGCAAAG TACGGTAATT
AAACGCAATG TGAAAGGTTG CTGGAACACT GGCTATTGCG GCATGGGTTG TCCAGTGAAT
GCTAAGCAGT CTATGTTGGT GACCACGATC CCCAGCGCCT TAGATGCGGG GGCTCAGCTA
ATCAGCCGCG CTAAAGTGAT GCAGATTGAA CACAGTGAAG GCAAGGTCAC TGGCCTTAAG
GCGCAAGTGG TGAACACGAA CTTTGAGCCT CGAGGTACCA CGCTGACGTT TTCGGCTAAG
CACTACATTT TAAGCGCTGG CGCCATCCAT ACGCCGGCGT TATTAATGCG CTCGAACACG
CCCGATCCTT TCGAACTGCT GGGTAGAACC TTCCTGCATC CGTCTTTATT GTCTGGCGGT
ATTTATGATG AACAAATCAA AGGCCACAGC GGTGCGCCGC AATCCATTTA TTCAGATGAG
TTTGTCTGGC GTGATGGCGC AAGTGGCGAT CTAGGCTACA AGTTGGAAGT GGCGCCGGTG
CACCCTGTGC TGGTGGCCTC AAAAACCTTA GGCTATGGTC AAAGTCATGC CGAACTGATG
AAAAATTTCA ATCGCATGCA AGTGGTTATC GCCCTTATTC GTGACGGCTT TAATGAGCAA
TGCCCAGGCG GTCAAGTGCG CTTAACCGAC AGCGGCTTCG CATTAGATTA CCCATTAACT
GACGGTTTTT GGCAAGGGGC GAAAAGGGCA TTTTTAAGCA TGGCCGAACT GCAATTTGCT
GCAGGGGCAA AGCAAGTTAG GCCTATGACT GAGGGACTGC CACAACTTAA TTCTTGGGCA
GAGGCTAAGG CTGAGATTGA AACCGCAGAT TTAGGTTTAC TTCGCACAGT TGTAGCATCG
GCTCATGTGA TGGGGGGCTG CCCTATGGGG GAAGACAGAC TCATCTCCAT GGTCAACAGC
GAAGGCAGCA GCCATTATTT AGAAAACTTA TCTGTCATGG ACGGTTCTGT ATTCCCAACC
AGCCTAGGAG CAAATCCGCA GCTGTCGATT TACGCCCTCG TTGCCCGCAA TGCCAGTCTG
CTAGCTCAAA GGCTAAAGCC TGTTGTTGGA TAA
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| Protein sequence | MSISDPIENG LKGGWLHIDA STLQVSRHFE ADVVIVGTGA GGGVAADILT QAGLKVIMIE
AGALKSSKDF DMEERTAYPN LYQQAASMKT ADKGISIFQG RTVGGATTIN WTTSIRTPEP
TLDFWAKEKS VVGLDTQSLA PWFDTMEQQL NISTWLYEPN RNNGALLEGC NKLGWQSTVI
KRNVKGCWNT GYCGMGCPVN AKQSMLVTTI PSALDAGAQL ISRAKVMQIE HSEGKVTGLK
AQVVNTNFEP RGTTLTFSAK HYILSAGAIH TPALLMRSNT PDPFELLGRT FLHPSLLSGG
IYDEQIKGHS GAPQSIYSDE FVWRDGASGD LGYKLEVAPV HPVLVASKTL GYGQSHAELM
KNFNRMQVVI ALIRDGFNEQ CPGGQVRLTD SGFALDYPLT DGFWQGAKRA FLSMAELQFA
AGAKQVRPMT EGLPQLNSWA EAKAEIETAD LGLLRTVVAS AHVMGGCPMG EDRLISMVNS
EGSSHYLENL SVMDGSVFPT SLGANPQLSI YALVARNASL LAQRLKPVVG
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