Gene Sden_3078 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_3078 
Symbol 
ID4019604 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand- 
Start bp3696440 
End bp3697051 
Gene Length612 bp 
Protein Length203 aa 
Translation table11 
GC content48% 
IMG OID637957130 
Productregulatory protein, TetR 
Protein accessionYP_564079 
Protein GI91794428 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.745436 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTGCCA CATCCTGTTC TGCCTTAGGC CGTCCAAGGG CTTTTGATCC CGAAGAAGCC 
CTAGAAAAGG CCTTAGAAGT GTTTTGGCAA AAGGGCTATG AAGGCACCTC ATTAACTGAT 
TTAACTAAGG CCATGGGGAT CAACAAACCT AGCCTGTACT CCACCTTTGG TAACAAAGAA 
GAGTTATTTC TTAAGGCCAT CGATCTTTAT TCAAATCGTC CTTGTGGCTT TTTTATGCCT 
GCATTAGCCC AGCCTAACTT ATACGCTGTG CTAGAAGCCT TGCTCAAAGG TGCCGCCTTG 
AGTTTGGCGG ATAAAAACCA TCCCCAAGGT TGTGTGGTGG TGCAAGGTGC ACTGGCTTGC 
AGTGATGAAA ACTCTAGCAT TAAGCAGGCC TTGATAAAAC GTCGCCTGGA AGGTGAGGAT 
GCGGTGAGAG CTCGATTGGA GCAAGCAGTA CTCGCGGGTG AAATGCCTAA TGGGTACTCG 
GCGGCCGTGA TGGCGCGTTA TTTGATGACC TTACTCAATG GCATGACGAT TCAATCGACC 
AATGGTGCCA CGGCTGAAGA GCTGATGGAT ATTGCCGAAT TTAGCCTATC TTTGTTGCGC 
AGCCAAGATT AG
 
Protein sequence
MSATSCSALG RPRAFDPEEA LEKALEVFWQ KGYEGTSLTD LTKAMGINKP SLYSTFGNKE 
ELFLKAIDLY SNRPCGFFMP ALAQPNLYAV LEALLKGAAL SLADKNHPQG CVVVQGALAC 
SDENSSIKQA LIKRRLEGED AVRARLEQAV LAGEMPNGYS AAVMARYLMT LLNGMTIQST 
NGATAEELMD IAEFSLSLLR SQD