| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2454 |
|---|
| Symbol | |
|---|
| ID | 4018953 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 2925250 |
|---|
| End bp | 2926455 |
|---|
| Gene Length | 1206 bp |
|---|
| Protein Length | 401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637956481 |
|---|
| Product | tryptophan synthase subunit beta |
|---|
| Protein accession | YP_563457 |
|---|
| Protein GI | 91793806 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0133] Tryptophan synthase beta chain |
|---|
| TIGRFAM ID | [TIGR00263] tryptophan synthase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGAGC TTAAGCTTGA CCCTTATTTT GGTGAATATG GCGGCATGTA CGTACCGCAA
ATTCTGGTGC CCGCCCTTAA ACAATTGGAA AGCGCTTTTG TGGACGCCCA GCAAGACCCA
GCATTTCAGG CAGAATTTAC CGATTTACTG AAAAACTACG CAGGTCGCCC AACGGCGCTA
ACTTTAACCC GTAACTTAAG CCCTAATCCG CTAGTGAAAA TTTACCTAAA GCGTGAAGAC
TTACTCCACG GCGGCGCCCA TAAGACTAAC CAAGTGTTAG GTCAGGCATT GCTCGCTAAG
CGTATGGGTA AGAAAGAGAT TATTGCAGAA ACTGGCGCGG GGCAGCACGG CGTTGCCACC
GCCCTTGCCT GCGCGCTGTT GGGGCTTAAA TGTAAAGTGT ACATGGGCGC AAAAGATGTT
GAGCGTCAAT CCCCCAACGT GTTTCGCATG AAGCTGATGG GCGCTGAAGT TATTCCTGTG
ACCTCAGGCT CTGCCACCTT AAAAGATGCC TGTAATGAGG CCATGCGCGA CTGGTCAGCA
AGTTATGATA AGGCCCATTA TTTATTAGGC ACGGCCGCAG GTCCGCACCC TTTCCCTACC
ATAGTACGTG AATTTCAGCG CATGATAGGT GAAGAAACCA AGCAGCAAAT ATTAGAAAAA
GAAGGCCGTT TGCCCGATGC GGTCATCGCC TGTGTGGGCG GCGGCTCAAA CGCCATCGGC
ATGTTCGCGG ATTTCATTGA TGAGCCGAGT GTTGAGCTTA TCGGCGTGGA ACCCGCTGGT
AAAGGTATAG ACACCCCAAT GCACGGCGCG CCGTTAAAGC ATGGTAAAAC CGGGATATTC
TTCGGCATGA AGGCCCCCTT AATGCAAGAC AGAGACGGCC AGATTGAAGA GTCATACTCT
GTCTCAGCAG GTCTTGATTT CCCGTCAGTG GGGCCACAAC ATGCGCACCT TAACGCCATC
GGCCGCGCCC GCTATGAGTC AGCCACAGAC GATGAAGCCT TAGCCATGTT CCAGCAGCTT
GCCCGCTGTG AAGGCATCAT CCCAGCGTTG GAGTCGGCCC ACGCGTTAGC GTATGCGGTA
AAACTTGCCA AAACTGCCAC CAAGGAAACC ATTCTCGTGG TTAATTTATC GGGGCGCGGT
GACAAGGACA TCTTCACTGT GTCTGACATT TTAGCGGCCA AAGAACAGGA GAGCGGCAAT
GACTAA
|
|---|
| Protein sequence | MTELKLDPYF GEYGGMYVPQ ILVPALKQLE SAFVDAQQDP AFQAEFTDLL KNYAGRPTAL
TLTRNLSPNP LVKIYLKRED LLHGGAHKTN QVLGQALLAK RMGKKEIIAE TGAGQHGVAT
ALACALLGLK CKVYMGAKDV ERQSPNVFRM KLMGAEVIPV TSGSATLKDA CNEAMRDWSA
SYDKAHYLLG TAAGPHPFPT IVREFQRMIG EETKQQILEK EGRLPDAVIA CVGGGSNAIG
MFADFIDEPS VELIGVEPAG KGIDTPMHGA PLKHGKTGIF FGMKAPLMQD RDGQIEESYS
VSAGLDFPSV GPQHAHLNAI GRARYESATD DEALAMFQQL ARCEGIIPAL ESAHALAYAV
KLAKTATKET ILVVNLSGRG DKDIFTVSDI LAAKEQESGN D
|
|---|
| |