Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_2356 |
Symbol | |
ID | 4018850 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 2801829 |
End bp | 2803553 |
Gene Length | 1725 bp |
Protein Length | 574 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637956379 |
Product | PepSY-associated TM helix |
Protein accession | YP_563359 |
Protein GI | 91793708 |
COG category | [S] Function unknown |
COG ID | [COG3182] Uncharacterized iron-regulated membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.59419 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGACA CTTTTTTTCG TTCCATGACT TGGCTGCACA CTTGGGTTGG ACTGTTAGTT TGCTGGGTGT TATTAATTAT TTTCTATGCA GGAAGCTTAA GCTATTTTCG CCATGATATT TCAATCTGGA CAGCGCCTGA GCTTCATCAA GGGGTATTGC AGCAGCAAAC GCCGCAAAAC CTCAAGCCAC AACTGGATAA AGTGCAGCAA TTGCTGCAAC AAAAAGCCGC CAATGCCGAT AGCTGGTTTA TCTTTCTGCC AAGCAGTCGC CATCCTTACT TAAGTTATGC CTGGCAGGAG CTCGCCCCAG AACCTGGGCA AAGAGGAACA TTAATCGAGG AGGTCCTTAG CGATGACAAT CAGACTGTCA TCGCTGATAA GCGCAGCTCC CGTGGTGGTG ATTTCTTCTA CCGTTTACAT TTCGACTTAC ACTATCTCCC TGTGATTGCC GCCCGCTGGC TGGTGGGTCT GTGCAGCTTA TTTATGCTGT TGGCGCTGCT CAGCGGTATT GTTATCCATA AACGTATCTT TAAAGACTTC TTTAGCTTTA GGGCCAACAA AGGGCCGCGC TCTTGGCTCG ATGGTCATAA TGTCACCGCC GTACTGGCAC TGCCTTATCA CTTGATGATC ACCTACACCG GCCTTGTGAC CTTTATGATG ATGTTTATGC CTTGGGGAAT AATGACAGCC TTCGATGGCA AAGATAGCAA TGAGAAAGTG CGAGCATTCA GAAGCCAAGC CGCCAGCGAG CAAGTGCAAA CCTTTGAGCC AATAAACTTA GGCTCAGAAG ATGTAAATTC AGCGCAGCTT AACCGTCAAC AAGTGGACCA AAGTTATGTA TTAAGCGAGC TATTGCCATC GATTGAGCGA CACTTAGCCC ATAAGCCCAT CAAGCAAATA GTCATAAGCC AGCCCCAAAG CCCAGATGCC AAAGTTAACG TTTACGCCGA TCTTGCCGAA GAAGTCACAG ATAAGCGTAT TCCTTGGGTT CTCAATCCCT TTACTGGTGA GCTCATTAGC CAGCCACTAG AGGAAGTGTC AGGCAGCAAG GCGACCCATG ACACCTTTAT GGCGCTGCAT ACCGCGCGCT TCTCTGAGCC CGTACTTCGA ATAATATTCT TTATTTTCGG CCTGATGGGC TGCGCCATGA TAGCCACAGG TACTGTGCTT TGGGCAGTGA AAATCCGCCA GAAACAAGCT AAGAACATGG CCCAAGGCCA AAAAGCCAGC TTAGGGCTGC GCTTAGTTGA AGGGTTAAAC TTAACCTTTA TAGCCGGCCT GCCCCTTGGC ACAGCTGCTT TTTTCTATGC GAATCGCTTA CTTGCCCCGC AGCTTGAAGG CCGAGCGCAA TTAGAAGTTG ATAGCTTTTT TATCAGCCTC GCCATGGTTG GCTTGTGCGC CCTGATTAGC ACAGGGCTTC ACATGTGGCG CGCTATATTT GCCTTGGCTG CACTGGCCTT TGCCATGTTG CCACTACTCA ATGGTTTTAC CTCAAGCCAA CACCTTTTCG ATAATATCGC CACCGGGCAA TGGGTGTTAG TAGGTTTCGA TCTGATGAGC CTCATTTTCG CTCTCGCACT AGGTTTTGCA GCAATCAAAT GCCACAACAA AGCCGCAGCA ACGGTCAACA ACACTAAGAA AATGCGCAAT GTAAATAAAA TAAACGCCCA AAATACGTCG AGTAAAGATG TGAACATCAG CACCGCCGCC CAAGGAGGTC AGTAA
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Protein sequence | MKDTFFRSMT WLHTWVGLLV CWVLLIIFYA GSLSYFRHDI SIWTAPELHQ GVLQQQTPQN LKPQLDKVQQ LLQQKAANAD SWFIFLPSSR HPYLSYAWQE LAPEPGQRGT LIEEVLSDDN QTVIADKRSS RGGDFFYRLH FDLHYLPVIA ARWLVGLCSL FMLLALLSGI VIHKRIFKDF FSFRANKGPR SWLDGHNVTA VLALPYHLMI TYTGLVTFMM MFMPWGIMTA FDGKDSNEKV RAFRSQAASE QVQTFEPINL GSEDVNSAQL NRQQVDQSYV LSELLPSIER HLAHKPIKQI VISQPQSPDA KVNVYADLAE EVTDKRIPWV LNPFTGELIS QPLEEVSGSK ATHDTFMALH TARFSEPVLR IIFFIFGLMG CAMIATGTVL WAVKIRQKQA KNMAQGQKAS LGLRLVEGLN LTFIAGLPLG TAAFFYANRL LAPQLEGRAQ LEVDSFFISL AMVGLCALIS TGLHMWRAIF ALAALAFAML PLLNGFTSSQ HLFDNIATGQ WVLVGFDLMS LIFALALGFA AIKCHNKAAA TVNNTKKMRN VNKINAQNTS SKDVNISTAA QGGQ
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