| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2347 |
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| Symbol | |
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| ID | 4018841 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 2782875 |
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| End bp | 2784797 |
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| Gene Length | 1923 bp |
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| Protein Length | 640 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637956370 |
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| Product | lytic transglycosylase, catalytic |
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| Protein accession | YP_563350 |
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| Protein GI | 91793699 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCAACA CACTCGTTAC ATCTTGTTTA ACAGCTGCCA GCATGGCGCT AATTTTTTTC
TCTCAAAGCT TGAGTGCTTA CACTCAAGAT CAACAAACCT ATTTGGATGC CAGCCGCGCA
CTAGAAAACA AACAATACGG CCAATATCGC ACCTTAAGAG CCAAACTCAA TGACTACCCA
CTGGCGATGT ATTTAGATTA CAACGCCACC ATGGCCGATA CCCTCAAGTT GCCTGGTAAA
AACGCCTTAA TTGAAATAGA AAAATATAAA GGCAGCCCGC TGTACAATTC GGCCCGTTAT
CGTTATTTAC TCACAGCAGG TAAAGCCCAA AGGTGGCGTG ATTTTCTTGT CATCTCCCCT
GACAGGCCCA ATGATGTCCG CCTACAATGC TACTTCAACC TTGCCTTATA CCATCAAGGG
GACAAAAAAA CGGCCTTTGA AGCAACCGAT GAACTCTGGC TCTATGGCAA GTCTCGTCCA
AACGAGTGCG ATCCATTATT TGCGCTTTGG ACTCAAGCAG GCCATCGCAG CCAAACCATG
ATCTGGTCCC GTATGCTGCT CAGCTTTAAT GCTGGCCAAC ATGGCTTAGT GAGCTATTTA
GCGCAAAAAA TTACCCGCCA TAAAACCGAA GCCAACCTAT TAGTCTCGGT TTATAAAGAT
CCCAACAGCT TAAGGCACAC CCAAAGGTTC AGTAATAATG CCGCCATCTA CGGTGATATT
GTTGAAGCTG GGTTAAGAAA ACTCGCCTTA TCCAATATAA ATCAAGCCAT CAGCTTGTAT
AAAAAGTACC ACAAACTTCA CCGCTTTGGC CCTGAACAAG ACGCTAGCTT GAATCATTAC
TTGGTACGCC GCGCCTTGAT TTTTAAAGTT GAAAAACAGC GCAGTCATAT CGATAGTATG
CTGCCTAAGC TTAAATCTGA TGAACTTTTT GGCATGCGTA TGCGTTGGGC CATAGGTGAA
AAAGATGATG CGACTGTGGC GAAATATTTA AACCTATTAA GCCCTGAAGG CAAGGCCGAT
CCACGCTGGC AATATTGGCA AATACGTATC ACAGGCAAAA CAGACGCTGC ATTGGCCCAA
ACCCAAGCCA ATATCTTAAG CCAAGAACGT AATTTCTATG GCTTCTATGC GGCGCAATCT
CTCAACGCTC CCTTGAGCAT GAATGATGAT GGCCTGGCAT TTTCCTCTAA CATGAAAACC
AAACTCAACC AAGACTCTGG CCTTGCAAGG GTGAGTGAGC TGTTAGCCAT TAAGCGTCCC
CATGATGCAC GCACCGAATG GATTTATCTG CTTCGCCGCC ATGATAATCA GACTAAGGCA
GAGTACGGCT TATTGGCACT AGAAAACGGC TGGTACAACT TCAGTGTCGA GGCTAGCATT
CAAGGGCAAC AGTGGAACGC GCTCAATTTA CGCTTCCCCC TCGCCGCACA AAAGTCATTT
GCAAAAGCCA GCAAACATTT TGGGGTTAAT ATCGATGAAA TTCGTGCAAT TTCTCGTCGT
GAGAGTGCTT TTTATCGCTT TGCCACATCC GGTGTCGGTG CCCGCGGCAT GATGCAATTA
ATGCCAGCGA CAGCCAAAGA AACCGCTCGT AAATACCGTT TACTCTATAA TCAACCTAAT
GACCTGTATC GCGCCGACAA TAACATCATG TTAGGCAGTG CCTATTACAG CCAAATTTTA
AAACAATTTA ACGGCAACAG GGTGCTGGCA ACCGCGGCAT ATAACGCCGG GCCTCACAGG
GTAAAACGCT GGTTAGCAGA TTCAAAAGGC CAATTAGATG TGATGAGTTT TATTGAAACC
ATACCTTATA CCGAAACTCG CGAATATGTT CAGGCGGTAT TGAGCTACCG CATGATCTAC
CAACAGTCTC ATTCGCCAAA TGCCAGCATG TTCACCACCT ATGAGCGTGA CTTTGCTTAT
TAG
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| Protein sequence | MRNTLVTSCL TAASMALIFF SQSLSAYTQD QQTYLDASRA LENKQYGQYR TLRAKLNDYP
LAMYLDYNAT MADTLKLPGK NALIEIEKYK GSPLYNSARY RYLLTAGKAQ RWRDFLVISP
DRPNDVRLQC YFNLALYHQG DKKTAFEATD ELWLYGKSRP NECDPLFALW TQAGHRSQTM
IWSRMLLSFN AGQHGLVSYL AQKITRHKTE ANLLVSVYKD PNSLRHTQRF SNNAAIYGDI
VEAGLRKLAL SNINQAISLY KKYHKLHRFG PEQDASLNHY LVRRALIFKV EKQRSHIDSM
LPKLKSDELF GMRMRWAIGE KDDATVAKYL NLLSPEGKAD PRWQYWQIRI TGKTDAALAQ
TQANILSQER NFYGFYAAQS LNAPLSMNDD GLAFSSNMKT KLNQDSGLAR VSELLAIKRP
HDARTEWIYL LRRHDNQTKA EYGLLALENG WYNFSVEASI QGQQWNALNL RFPLAAQKSF
AKASKHFGVN IDEIRAISRR ESAFYRFATS GVGARGMMQL MPATAKETAR KYRLLYNQPN
DLYRADNNIM LGSAYYSQIL KQFNGNRVLA TAAYNAGPHR VKRWLADSKG QLDVMSFIET
IPYTETREYV QAVLSYRMIY QQSHSPNASM FTTYERDFAY
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