| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2070 |
|---|
| Symbol | |
|---|
| ID | 4018562 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 2456923 |
|---|
| End bp | 2458320 |
|---|
| Gene Length | 1398 bp |
|---|
| Protein Length | 465 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637956094 |
|---|
| Product | glycoside hydrolase family protein |
|---|
| Protein accession | YP_563075 |
|---|
| Protein GI | 91793424 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3325] Chitinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTATTA ATGCTCAAAC CGAATCCCCA TCTCATGGCA AAGAAGTCAT TGGTTATATA
ACTAATTATG ATGGTTGGAA AAGTCAAGCT AGTCTCGTGG TGCCAGAGCA GGGATGCTAT
TGTCAATTGA ATGTAGATTT CAGTAAATAC ACCATTCTTA ATTTCGCGTT CTTTGGTTTG
GCGAAAGACG GCTCTTTGCA TAGTGCTGAT GGGCGTAATA AAAATATTTT TCTTCAAGGT
CAGCTACAAG AATCCAGCCC TCTGCTCACA ACACCATACT ATAATAGCTA TGACACGCTT
ATTTTGTATG GAAGTACTGC AACATCACAA CAAGTAGACA CTGATGGCTT GATAAAATTG
GCGCATGCTG CGGGCGTCAA GGTTATGGCC TCGATAGGCG GATGGAGTAT GTCCAAGCAT
TTTTGTGAGG TGGCTGCAGA TGCTCGCAAG CGCAGCACTT TTATCGACGA TTGTGCCAAC
CTGATCACTA CTTTTGGATT TGATGGTATC GATATCGACT GGGAATATCC CAATGAAATG
GGTATGAATA TTGAAAATTA TTCTGATGCG GACTACGCAA ATTTTGCAAC CCTGATGGCA
GAGCTGCGCA GGGAAATTGG TACTGGCAAC GAGAATGGCA AGGTACTCAT TACCGCCGCT
ATGTCTGCGG ACCCCACCAA TCTGGCGGGA TATAATTGGG AAAGACTACA GGCGAGTATG
GATTACTTTA ATATCATGAC CTACGATATT AACGGTGGCT GGTCTGATAA AGCTGGGCAT
AACTCACCGC TATACAATTA TCCAGGTGCA GAAAGGTCAT TATCTCTCGA TAGCACGACC
CAGTTTCTGA TAGAGCAGGG TGTGGAACGA AACAAAATCA ATTTGGGTGT GGCGTTTTAT
GGTCGCGGCG TTATCACAAA GGATCCCGCC GTGCTCAATG GTCCTACGGC CGACAAAGTT
AAAACAATTC CGCAGCCGGG TGAAGAGTAT TTTCAACCAG ATGGACCAAT AATGAGTTGC
GGTGATTTTG ATAACTGGGG ATACTGGGAC GCTACGCCGT TCTATAGTGC TATTCAACAA
AAAACCGGGG GCGGCACAAT CAATGGTTGG AACTCTCACT GGGATGCAAA TGCAAAGGTT
CCGTATCTGA CCAAAGACAA TTATTTTCTT AGTTATGACA ATGTGCGTTC AATCAAAGAG
AAAGCCTATT ATGTCGTAGA TGAAGACTTG GCGGGCCTTA TTGTTTGGAA CGTTTATGGA
GATATGGAGA ATATGATGGA GTCTGAGCTT GTTGGTCATA AGAACAGGCT CTGTCCTAAT
AGAACCAATG TGCTTGCCGA TGCTATTAAT GAGGCATTTA TTATCGGAAA CACGAGGCAT
TTAATACAGA ACAGATGA
|
|---|
| Protein sequence | MSINAQTESP SHGKEVIGYI TNYDGWKSQA SLVVPEQGCY CQLNVDFSKY TILNFAFFGL
AKDGSLHSAD GRNKNIFLQG QLQESSPLLT TPYYNSYDTL ILYGSTATSQ QVDTDGLIKL
AHAAGVKVMA SIGGWSMSKH FCEVAADARK RSTFIDDCAN LITTFGFDGI DIDWEYPNEM
GMNIENYSDA DYANFATLMA ELRREIGTGN ENGKVLITAA MSADPTNLAG YNWERLQASM
DYFNIMTYDI NGGWSDKAGH NSPLYNYPGA ERSLSLDSTT QFLIEQGVER NKINLGVAFY
GRGVITKDPA VLNGPTADKV KTIPQPGEEY FQPDGPIMSC GDFDNWGYWD ATPFYSAIQQ
KTGGGTINGW NSHWDANAKV PYLTKDNYFL SYDNVRSIKE KAYYVVDEDL AGLIVWNVYG
DMENMMESEL VGHKNRLCPN RTNVLADAIN EAFIIGNTRH LIQNR
|
|---|
| |