| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1888 |
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| Symbol | |
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| ID | 4018376 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 2215834 |
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| End bp | 2218626 |
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| Gene Length | 2793 bp |
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| Protein Length | 930 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637955909 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_562894 |
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| Protein GI | 91793243 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000133848 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATGGT TGAGCTTAGT GCTTTGTAGC GTATTTCTTT TTCTCGGCTC CGAACTTGAA
GCGGCAACGG CTGACGCGGA TTTATCCTTC GATGAGCCGC TAAAATTGGT GCTTGGGGAG
GGCAGTTACC CGATCCAATT TCTGAACGAA GAGGGGGAAC CCGCGGGTCT GCTTGTGGAC
CTATGGCGTC AATGGTCCTT AAAAACCGGT ATAGAGGTCA TTTTTGTGGC CCGCCATTGG
CAAGAAAGCT TAAATCAAAT CACCAATAGC CCCAACACAG TGCATGTGGG CATGGCCATC
ACCCCAGAGC GTGAAAAAAT ATTTCATTTT GCAAACCCCA TAGGCGGCAT TAAAAGTTAC
TTGTATTTAC ACTCAGATAT TGCATCTAAA ACCACGATAT CTGAGCTTAT TCCATTTCAA
ATAGGTGTGG TAGCAGGCTC CGCCCATGAA AGTAATTTAC TTACCATAGA ACCTAAATTG
ACCTTTCGTG AGTATAAGAA TCGTGAAGCC TTGCTCGAAG GGGTATCTCG GGGTGAAGTC
TATGTATTTG CGGGTATTGA AGGCTACCAA AGAGGGTTAA CACTGGAGAA AAATATCGGT
GAAACCTTTA CAGGTTCGAT GCGGATCCTT ATTCAAAACA CCTTATTGTC ACCTGCCATA
GGTGCGAATA ATCCTAAGTT AATAGAAGTG ATCAATGAAG GATTCTCAAA ACTAAATCCG
CAGGAGCTTG AGCGTATTGA GCGCCGCTGG CTTGGCTATC ATAGAAAGAC GACGGGTATT
GTTATTGCTG GGCAGGCTGG GGTTGAGCCT TTTATGGACC TTGGCCCCGA TGGTCAGCCC
TATGGCATGT TTATCGATAT TTGGCGGCTC TGGTCGACAA AAACCGGTAT TAATATCGAA
TTTTTAGCCA GCAATATGAC CGACTCCATC ACAGATGTGA GACAAGGTAA TGCCGATGTG
CACATGGGCT ACCCAGAAAG TCATGAGCTC AATAGCGGTC TTAAGCAGGC ATGGCAGATT
TTTAGCCTCA AAAGCCGACT CTTTATGCAT AAATCCCCAC TGAACAATAA GGCTGAGCTA
AAAGGGATGC GTATTGGCGT CTTTCCCACC GCCCCTTATT TATCTCAAAT TACCGCACAG
CTTCCCGGGG TGCATATCAA GTTTTATGAC AGCTTAGGTT TAATGATTGA CGCTGCTAAT
AAGGGCAGCA TCTCTGGATT TATTGCTTCA GGGGCGATGA CCACACACCA CCTACTCAAA
AATAAAATCT GGGCCGATTA TCATCAATTT GATGGGCTCG ATTTTGAAAC CCAGATGTAC
AGTTTAACCC GCCTTGAAGA CAGTGGTTTG GCTGATCGCA TTAAAGCGGG CTTTATGTTG
ATTAATCATA AAGAGTTAGC TCAAATCGAA CAGAAATGGC TGATTAACCC AGAAGACAGA
AGAAGCCAAG CACAAAACTC ACAGATCATT TTTTCATCTC AAGAACGCCA GTACTTGGAT
AGTTTAGGGG CGATAAAAAT GGGCTATCTG AAGGACTGGG CGCCGATGGA ATTTGAAGGC
GATGACGATG AATTTTTAGG AATTAATAAT GATATTCGCG AAATCATCAG TAAACAGTTA
GGCATAACAA TATTGCCTGT GGCCTATGAT GACTGGAAGA AGTTAATGGC TGACATAGTC
CAAGGGGATA TTCAGCTGGT TGGCAGTGTC GGTAAACACA GGGACAGGGA CTTGCTTATT
TCTGCCCCCT ATTGGCCATC GCCTTGGGCA TTGGTCAGCA ATTTTAATCA GGCCAGTGTA
TTCGATTTGA CTCAGCTGCA TGGTCAGCGA GTGGCTGTCG TCGAAGGCTA TAATTTAGTT
AAAGAATTAA TCAGTCAATA CCCAGGTATT GAACTTGTGA TGGTAAAAGA CATAAAAGAA
GGCCTTAGTT TGGTGTCTCA AGCTAAAGTG GATGGTCTAA TCGAGCAAGT GGTGACTTTG
GCCAATGCCC TTAAAAATCA TGACTATCCC AATTTAAAAA TTGCTGTGTT AACCGACCTT
GCCCAACGTC AAAGTCACAT AGGCATTTAT CCTGGAATTG CACCGCTACT GGAACCCCTT
AACCGTGCCT TAGGTACCAT AGACGAAGCC ATGCAGCAAA AAATCAATCA GAAATGGGTC
TCTATTGAGC TTGAGTCTGA TTTTGGTAAA TACCTGCACT GGTTTTTCAT CTCATTGATT
GTTTTGAGCA TAGTGCTAGT CATTGTGGTG CTAACCTTGT TAATTAATCG CCGCTTAAAA
GCAGAAATTG AACGACGCAA ACAGGCAGAA CTCGCCTTAA TTCACCTGGC CCAGTACGAC
AGTTTAACTG ATTTACCCAA CCGAAATTTA TTGGATGACA GATTGCAGCA GGCTGTGCTT
TCCCATTATA GAAGTGAGTA TAAATTTGCG TTGTTATTTA TCGATTTAGA TGGCTTTAAA
CAAGTTAATG ACACCCATGG TCATCCAACG GGTGACGCTC TGCTTATCCA AGTGGCAGAG
CGATTGAACC AAGTGTTAAG GCAATCGGAT ACCTTGGCCC GCTTTGGGGG GGATGAATTT
GTGGTGTTGT TGAATAACAT TGAGAGTTTA GCCCAAGCTA AGTTAGTGGA AAGTGCTATT
CGCTCAGCCC TAACCCAAGC CTTTATTATC AACGGGGTGC AGGTGACAGT AGGCGCAAGC
ATTGGCATTG CCATTTATCC CGACGATGCA GATGATGCCA TCAATTTGAT GCGCATTGCC
GACAGAAAAA TGTATCAAGA GAAACATGAC TGA
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| Protein sequence | MKWLSLVLCS VFLFLGSELE AATADADLSF DEPLKLVLGE GSYPIQFLNE EGEPAGLLVD
LWRQWSLKTG IEVIFVARHW QESLNQITNS PNTVHVGMAI TPEREKIFHF ANPIGGIKSY
LYLHSDIASK TTISELIPFQ IGVVAGSAHE SNLLTIEPKL TFREYKNREA LLEGVSRGEV
YVFAGIEGYQ RGLTLEKNIG ETFTGSMRIL IQNTLLSPAI GANNPKLIEV INEGFSKLNP
QELERIERRW LGYHRKTTGI VIAGQAGVEP FMDLGPDGQP YGMFIDIWRL WSTKTGINIE
FLASNMTDSI TDVRQGNADV HMGYPESHEL NSGLKQAWQI FSLKSRLFMH KSPLNNKAEL
KGMRIGVFPT APYLSQITAQ LPGVHIKFYD SLGLMIDAAN KGSISGFIAS GAMTTHHLLK
NKIWADYHQF DGLDFETQMY SLTRLEDSGL ADRIKAGFML INHKELAQIE QKWLINPEDR
RSQAQNSQII FSSQERQYLD SLGAIKMGYL KDWAPMEFEG DDDEFLGINN DIREIISKQL
GITILPVAYD DWKKLMADIV QGDIQLVGSV GKHRDRDLLI SAPYWPSPWA LVSNFNQASV
FDLTQLHGQR VAVVEGYNLV KELISQYPGI ELVMVKDIKE GLSLVSQAKV DGLIEQVVTL
ANALKNHDYP NLKIAVLTDL AQRQSHIGIY PGIAPLLEPL NRALGTIDEA MQQKINQKWV
SIELESDFGK YLHWFFISLI VLSIVLVIVV LTLLINRRLK AEIERRKQAE LALIHLAQYD
SLTDLPNRNL LDDRLQQAVL SHYRSEYKFA LLFIDLDGFK QVNDTHGHPT GDALLIQVAE
RLNQVLRQSD TLARFGGDEF VVLLNNIESL AQAKLVESAI RSALTQAFII NGVQVTVGAS
IGIAIYPDDA DDAINLMRIA DRKMYQEKHD
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