| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1878 |
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| Symbol | |
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| ID | 4018366 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 2205174 |
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| End bp | 2206193 |
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| Gene Length | 1020 bp |
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| Protein Length | 339 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637955899 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_562884 |
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| Protein GI | 91793233 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAGAATA CAAAAGAACT GGATCATTCG GCGCATATTC TAAGAATGGT TATTCCGCAA
ATGGCCAAAT TGCATATTCC TGTGACTCCG GAAAACTATG CTATTTGGTA TGAATATTTT
TCAGAATCCA ATCTCAATTT AAAACGTGCT ATCGATGGCC TATTGGCCAA TGAGGTGCGT
TTTACTAAGC AAGTGAATCA GGGTTTGTAC AATAATTTTA TCCAGGAGCA ATCTCCTGAA
ATCATTCAAA ATGTACAAAT AGAGACCCAA ATACTGATCA AGAGTTTGTT TAATAAAATT
CATCAACTGA ACGATGAAAC CCAAGGCTTT GCAGAGAGTT TAGAAGGGTA TAATCAGCAG
CTTCAAGATA ACCCAACTGT GGGTGTGTTG AACGAAATCA TTGTTAATAT TTCTTCAGAA
GTGGACTTAG TCATCAGTCA CAATGAGGAG ATGAAATCCA ATCTCAACAC CCTAGATTTT
GAACTCAGTC GCCTGAAAGA GGAGATGGAT AACCTCAGTA AGGTAGCGAT GACAGATGAA
TTGACATCCC TTAATAATCG CCGTGCATAT GAATTGTTTG CCGTCGAGCA AGTGGCTAAA
TTTAATCAGA CTCAAACAGT GTGCAGCTTG TTAATGATAG ATATCGATCT CTTTAAAGGC
TTTAATGACA CTTATGGTCA CCTTATTGGG GATAAAGTCC TAGCCTATGT GGCGTTGTCA
TTAAAACAAG GTGTCAAAGG GGCCGACTTT GTGGCGCGTT ATGGGGGGGA GGAGTTTGTC
ATTCTGCTGC CAGGTACCGA TCTGCAAGAT GCGGTAACAT TGGCCAATAA TTTACGTGAA
CTCGTGTCTC ACAAACAACT TACTGTGGGC AAAGAAAAGA AACAACAATT AGGCAAGGTG
ACAGTATCCA TTGGGGTCGC GAGTATACAG ACAGGTGATG ATGCCGATAC CTTGCTATCG
CGTGCCGATG AGAAGCTTTA TGAAGCCAAA CAAGCGGGCC GTGATTGTGT TAAAAGCTAA
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| Protein sequence | MENTKELDHS AHILRMVIPQ MAKLHIPVTP ENYAIWYEYF SESNLNLKRA IDGLLANEVR
FTKQVNQGLY NNFIQEQSPE IIQNVQIETQ ILIKSLFNKI HQLNDETQGF AESLEGYNQQ
LQDNPTVGVL NEIIVNISSE VDLVISHNEE MKSNLNTLDF ELSRLKEEMD NLSKVAMTDE
LTSLNNRRAY ELFAVEQVAK FNQTQTVCSL LMIDIDLFKG FNDTYGHLIG DKVLAYVALS
LKQGVKGADF VARYGGEEFV ILLPGTDLQD AVTLANNLRE LVSHKQLTVG KEKKQQLGKV
TVSIGVASIQ TGDDADTLLS RADEKLYEAK QAGRDCVKS
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