| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1711 |
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| Symbol | |
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| ID | 4018189 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 2014691 |
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| End bp | 2015899 |
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| Gene Length | 1209 bp |
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| Protein Length | 402 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637955724 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_562718 |
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| Protein GI | 91793067 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000000765458 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCGACTA AAAAACAAAT TATATTGCCT ATTGCAGTGA TAGCTGTAGG CATCGCAGGA
CTTATCGGGA TTTCAGCATT AAAAGAACCT CCTGCGGAAA AACCTAAAGT GGACAATACG
CCGTTAGTGT CGATTGAAGC CATAGACTAC CAATCCATGA CATTCTCCGT CAGTTCTTAT
GGTGTGGTCA GCGCTAAATA TCAAACCGAA TTAATTTCTC AAGTCACGGG TGAAATCCTT
TATCTATCAG AGAGCTTTGT GAAAGGTGGC TTCGTTAAGA AGGGGGATAT TTTAGCGAAA
ATCGATCCCA GTGATTATGA ATCAAATTTA TTGGATGCAG AGGCAACTTT AGCATCCAGT
AAAGCCGCAC TAGTGCAAGA AAAAGCCAAC GCTAAAGTCG CTGAGAAAGA ATGGGCACTG
ATCACCAACG GTACCCCTAC CGCGTTAAGT CTACGTAAAC CTCAACTTGC TCAAGAAATA
GCTCGCCAAA AAAGTGCCGA AGCGGGTCTT AATCGCGCTC AACGCAACCT TGAGCGGACC
GTTATTCGTG CCCCCTATGA TGCCTTGATA GCTAGCCGTG AAATTGGTTT AGGCTCATAC
GTGAGTACAG GTTCATTAAT TGGCTCCATT CTGAGTACAG ATAAAGCCGA GGTACGCTTA
CCATTAGCAG ATAAAGAGCT GCAATATCTT CAAAATAAAG GCTTAAACGC TAGAGTCACT
CTCTCGGGTA ACTTAGCCGG CAGTGCCCAA TTATGGCAAG GCAAGATAGT GCGAAGCGAA
GGGGTTGTTG ACAGTAAGAG CCGTATGACT TACTTAATCG CAGAAATTGT CGACCCCTAT
GGTTTACAGG GAAAGACTCA ATCCCAGCAC AACAATGAAC TCAGATATGG CACCTATGTC
ACCGCACAAA TCGAAGGCAG CCAAGCGGGT AATGTTGCCG TAGTACCCCG CCACCTTGTC
GTAAATGGCC AAATCGCCAC CTTAGATGCA GAACAAACCT TACGCTATAA ACCCGTTAAC
ATTATCCGCC AACAAGGCGC CAATGTTGTC ATCGCTGAGG GCATTGAAGA TGGCGCGAGC
CTTATTACCT CGGCGCTGGA TTATCCGGTA GAAGGCATGA AGCTTGCTAT CCCTGCTGAT
AAGATACTGC AAAAAGAGCC TGTTACAGAG GCTAGCGCCA CAGATTTAGC CATGAGCCAC
GAGGAGTAA
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| Protein sequence | MATKKQIILP IAVIAVGIAG LIGISALKEP PAEKPKVDNT PLVSIEAIDY QSMTFSVSSY
GVVSAKYQTE LISQVTGEIL YLSESFVKGG FVKKGDILAK IDPSDYESNL LDAEATLASS
KAALVQEKAN AKVAEKEWAL ITNGTPTALS LRKPQLAQEI ARQKSAEAGL NRAQRNLERT
VIRAPYDALI ASREIGLGSY VSTGSLIGSI LSTDKAEVRL PLADKELQYL QNKGLNARVT
LSGNLAGSAQ LWQGKIVRSE GVVDSKSRMT YLIAEIVDPY GLQGKTQSQH NNELRYGTYV
TAQIEGSQAG NVAVVPRHLV VNGQIATLDA EQTLRYKPVN IIRQQGANVV IAEGIEDGAS
LITSALDYPV EGMKLAIPAD KILQKEPVTE ASATDLAMSH EE
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