Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_1667 |
Symbol | |
ID | 4018143 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 1937579 |
End bp | 1938775 |
Gene Length | 1197 bp |
Protein Length | 398 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 637955678 |
Product | PrpF, AcnD-accessory |
Protein accession | YP_562674 |
Protein GI | 91793023 |
COG category | [S] Function unknown |
COG ID | [COG2828] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR02334] probable AcnD-accessory protein PrpF |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.870319 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGTCTT CAACTCAGTT AACTTTCCCC CCCCAATTGA GAGTGCCCGC CACCTATATG CGCGGCGGCA CCAGCAAAGG GGTATTTTTT AGCCTCAAAG ATTTACCCAT AAAAGCCCAA GTGCCAGGGG CTTATCGTGA TGCCCTGTTA TTGCGTATTA TCGGTAGTCC AGACCCATAC GCCAAACAAA CCGATGGCAT GGGCGGTGCG ACTTCAAGCA CCAGCAAGAC GGTAATTTTA TCTAAAAGTG AGCAAAAAAA TCACGATGTA GATTATCTGT TTGGACAAGT GGCCATAGAC AAAGCCTTTG TGGACTGGAG CGGTAACTGC GGCAACTTAA GTGCTGCCGT GGGGGCGTTT GCCATCAGCA ATGGCCTAGT GGACAGCAGC CGTATTCCAC AAAATGGCAT AGCAACAGTG CGTATTTGGC AGGCCAATAT TAACAAAACC ATCATAGCCC ATGTGCCCAT GACACAAGGT CAAGTGCAAG AAACCGGTGA TTTTGAGCTC GATGGGGTCA CCTTTCCAGC CGCCGAAGTG CAGCTTGAAT TTATGGCGCC AGCGGACGCT GAGGGCGCCA TGTTCCCCAC GGGCAATCTT GTCGATGAAT TAGCTGTGCC AGGCCTTGGC AATATTAAGG TCACCTTAAT CAATGCCGGT ATCCCCACCA TTTTTGTCGA TGCCGCCGCC ATAGGCTACA GAGGCACTGA ACTTCAAGAT GCCATTAATA ATGATGAAAA AGCCTTAGGC TTATTTGAAA CTATACGTGC TCATGGCGCA GTGAAAATGG GCTTAATTAA GCACATAGAT GAAGCACAAA ATCGCCAACA TACCCCTAAA GTTGCCTTTG TGGCCGCGCC ATTGGACTAT CAGGCGTCTA GCGGGAAAAG GGTCAAAGCG ACTGAGGTGG ATCTATTGGT GCGCGCCATG TCCATGGGTA AATTACACCA TGCCATGATG GGCACAGCTG CGGTTGCCAT AGGCACGGCG GCGGCAATTC CCGGCACCTT AGTGAATTTG GCCGCGGGCG GCGGTAACCG TCAAGTAGTG ACCTTCGGTC ATCCATCTGG GGTGTTAAAA GTGGGCGCTG AGGCTGAGCT TATAGACAAC CAATGGCAAG TGACTAAAGC GATAATGAGC CGCAGCGCGC GGGTGCTGAT GGAAGGATGG GTGAGGGTGC CAGAGCCTAT TGTCTAA
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Protein sequence | MTSSTQLTFP PQLRVPATYM RGGTSKGVFF SLKDLPIKAQ VPGAYRDALL LRIIGSPDPY AKQTDGMGGA TSSTSKTVIL SKSEQKNHDV DYLFGQVAID KAFVDWSGNC GNLSAAVGAF AISNGLVDSS RIPQNGIATV RIWQANINKT IIAHVPMTQG QVQETGDFEL DGVTFPAAEV QLEFMAPADA EGAMFPTGNL VDELAVPGLG NIKVTLINAG IPTIFVDAAA IGYRGTELQD AINNDEKALG LFETIRAHGA VKMGLIKHID EAQNRQHTPK VAFVAAPLDY QASSGKRVKA TEVDLLVRAM SMGKLHHAMM GTAAVAIGTA AAIPGTLVNL AAGGGNRQVV TFGHPSGVLK VGAEAELIDN QWQVTKAIMS RSARVLMEGW VRVPEPIV
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