| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1524 |
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| Symbol | |
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| ID | 4017997 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 1770103 |
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| End bp | 1772178 |
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| Gene Length | 2076 bp |
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| Protein Length | 691 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637955534 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_562532 |
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| Protein GI | 91792881 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG5271] AAA ATPase containing von Willebrand factor type A (vWA) domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTTTGC ATTTTATTCG CCCCGAGTGG CTATTATTGC TGCTGCCATT AGCATTATTA
AGCTTGCTTG CCTGGCGTAA AAACAGCCAG CAATCGGCTT GGCAGCATTA TATCGCCCCC
CATTTAACCT CGGCACTTAT TAGCCCAAGT ATGCAAAGCA GTAAGCACCC CACTTGGCTG
CTGGCCGCCG CCTGGTTTAT TGCCGTCATC GCCGCAGCAG GACCTGCAGT CAACAAGCAA
AATTTGCCAG TATTTGCGAC AGAGCAAGGC CGGGTGCTGG TGATGGACAT GTCGTTATCT
ATGCTAGCTA CCGACATGAG CCCCAACCGC TTATCTCAGG CTAAATTTCG GGCAAGCGAT
CTCATCAGTC AGCTTAAAGA AGGTGAAACA GGACTTATCG CTTATGCAGG TGATGCCTTT
ACCATAAGCC CCTTAACGCG CGATAACGCC ACCTTGCTGA ATCTGTTACC GAGCTTATCT
CCAGATATCA TGCCAGCTCG GGGCTCAGAT CTTGCTGGTG CACTACGCCT AGCACAAAGC
TTGCTAGCCC AAGGTGGACA TATCAATGGT GACATTATCG TGCTCACCGA CGGCATTTCC
AGCAAGCAAT TTGATAATGC TAAAGCCAGT CTCAAGGGCA GTCGCTATCG CTTGTCTATC
TTGGCTCTAG GCAGTGAGCA AGGTGCCCCT ATTCGTCTTG CCGACGGACA ATTGCTCAAA
GACAATGTTG ATGACGTCAT TATTGCCAAG ACCAACTATG GTTTATTGCA AAAGCTTGCT
CGATATCAAA AAGGCATTCT TGTCCCGGCG CAGGCCGATG GCAGCGATCT TAAGCAATTG
CAAGACTGGC TTGCCACCGA TGGCGATGCC AGAGCCACTG AGCTTGAAGG TGAAAGCTGG
CAAGACTTAG GCCCCTATTT AGCCTTATTA TTGTTACTCC CTTGCCTATT AAGCTTTCGT
CGCGGCTTGT TGCCTTTGGT CGCACTATTT ATGTTTTATC AACCCACTAG CGCCCAAGCA
AGTCTATGGG ATGACCTTTG GCAGACGCGG GATCAGCAGG CCAATGCGGC TTTCGAAGCT
GAAGACTTTC ATACTGCCAG CGACAAATTC GACGATCCCC TTTGGCGTGC CAGTGCCCAC
TATAAGGCTG GTGACTTTGA AGCCGCACTT AAAGGATTTG AGCAAGATAG CAGTGCCAAT
GGCTTATACA ATCAAGGCAA TGCACTCATG CATTTAGGCA AAATCGATAA AGCCATCAAA
CGCTACCAAG AAGCATTAGC GCTAAAGGCC GACTTCCCTG AAGCCAGTCG TAATCTCGCC
TTAGCACAAC AAGCTAAGCA GGACAAAAAG CAAGGAGACA ATCAATCCGC GGAAAACGGT
GAGTCTGGTG AAGACGGCGA CGCCAATGAG GGAGGCGATA AGAGTAAAGG CTCAAACTCT
GGCTCTGATG ACTCAGATGA CGGCGATGAC AGTAACTCCG ACTCGAGCGA CTCAAGCTCA
AACAGGGCTG GTTCAAATAA CTCAGGCTCC AAGGGCACTG AATCTAAGGA CTCTGACACC
CAGGATAATC AAGATGCCAG CAGCGCATCA CAAGATGATG ACACCTCAGA GCAAGGCGGC
GATAAGTCTG ATGAGACTAA CGCCTCATCT GGCGGTCAAC AATCTGACGT TGATGAACCG
AGTTCAGAAA AACAAGACAG CGGCGGCACC GATGATCAAG CAATGAGCGA GCAACAAGGG
GCTCAATCGG CGAGTGAACA AGGTAAAGAC CCCAATAGCC AAGCTCAAGA GAATGAGGCT
AGCATGCAAG CCGAGCTGGA AAAACCTGCT TCAGGCTCAA AGCAGCAAAC TGCTGTGGGG
GAAAAACCAT CTGATAACGC CCCCGAGCAA CAAACGGCTG CGGGAGAAAT GTTAGCGCCC
ACTCAAGCTC AAACTCAGGC ATTACCCGCA GAAATGGAGC GAGCCCTTCG CGCTGTCAGT
GAAGACCCCC AAGTTCTGCT GCGAAATAAA ATGCAACTTG AATACCTTAA GCGCCGGCAA
GAGGCGCAAG CACCTAAGGA TGATGAACAG TGGTAA
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| Protein sequence | MPLHFIRPEW LLLLLPLALL SLLAWRKNSQ QSAWQHYIAP HLTSALISPS MQSSKHPTWL
LAAAWFIAVI AAAGPAVNKQ NLPVFATEQG RVLVMDMSLS MLATDMSPNR LSQAKFRASD
LISQLKEGET GLIAYAGDAF TISPLTRDNA TLLNLLPSLS PDIMPARGSD LAGALRLAQS
LLAQGGHING DIIVLTDGIS SKQFDNAKAS LKGSRYRLSI LALGSEQGAP IRLADGQLLK
DNVDDVIIAK TNYGLLQKLA RYQKGILVPA QADGSDLKQL QDWLATDGDA RATELEGESW
QDLGPYLALL LLLPCLLSFR RGLLPLVALF MFYQPTSAQA SLWDDLWQTR DQQANAAFEA
EDFHTASDKF DDPLWRASAH YKAGDFEAAL KGFEQDSSAN GLYNQGNALM HLGKIDKAIK
RYQEALALKA DFPEASRNLA LAQQAKQDKK QGDNQSAENG ESGEDGDANE GGDKSKGSNS
GSDDSDDGDD SNSDSSDSSS NRAGSNNSGS KGTESKDSDT QDNQDASSAS QDDDTSEQGG
DKSDETNASS GGQQSDVDEP SSEKQDSGGT DDQAMSEQQG AQSASEQGKD PNSQAQENEA
SMQAELEKPA SGSKQQTAVG EKPSDNAPEQ QTAAGEMLAP TQAQTQALPA EMERALRAVS
EDPQVLLRNK MQLEYLKRRQ EAQAPKDDEQ W
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