Gene Sden_1382 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_1382 
Symbol 
ID4017745 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand- 
Start bp1605201 
End bp1605884 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content44% 
IMG OID637955379 
Productregulatory protein GntR, HTH 
Protein accessionYP_562391 
Protein GI91792740 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.00000764152 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACTTAG CCTCTGAATC ACCTCAACCC ATTGTTCATC AAACTCGCAC TCAAGTCGTG 
TTGAAAGTCA TCCGAGAATG GATTTTATCT GGCCAAATCA AAGGCGGTGA ACCCTTAAGG 
CAGTCATACA TTGCCCAAAA GTTAAATGTG AGTCGAATTC CTGTTCGTGA AGCCTTGGTA 
CAGTTGGATG CAGAAGGCTT AGTTAACTTT GAGCCTCATA AAGGTGCGAC TGCCACCCTA 
TTGTCTGTGG AGCAAGTGAC CGAGCTTTTT GAGCTCAGGG CCATGATTGA GGTCGATTTG 
CTTGCAAAAG CTATCCCGAA TCTGCAAGAT GTTCACCTTA TAAAGGCACA GAGTGTCTTA 
GATCAGCTAG AGCTGGCTTT TAAACTAGAA AGTTCTGTAG CAACTTGGAG CGAATTAAAC 
AGACAATTTC ATACCTGTTT ATACCAAGCG GCTAACCGCC CTCATACATT AGAGGTTGTT 
CAAGGCTTGA ATATCCATAG CGATCGCTAT ATTCGCTTGC AACTTTTACA TACTGGGGGG 
ATCCCGACTG CCGAACGAGA GCATAGGGCC TTACTTGAGC TGTGCCAGTG CAAAGATATT 
GCCGGCGCCA GTGAATTATT ACATCAACAT ATTATTGGTG CACTAGCGGC AATTAAAGCC 
TTAGTTGAAA AACAAGTGAA CTAG
 
Protein sequence
MNLASESPQP IVHQTRTQVV LKVIREWILS GQIKGGEPLR QSYIAQKLNV SRIPVREALV 
QLDAEGLVNF EPHKGATATL LSVEQVTELF ELRAMIEVDL LAKAIPNLQD VHLIKAQSVL 
DQLELAFKLE SSVATWSELN RQFHTCLYQA ANRPHTLEVV QGLNIHSDRY IRLQLLHTGG 
IPTAEREHRA LLELCQCKDI AGASELLHQH IIGALAAIKA LVEKQVN