Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_1254 |
Symbol | |
ID | 4017469 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 1464886 |
End bp | 1465668 |
Gene Length | 783 bp |
Protein Length | 260 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637955250 |
Product | tetratricopeptide TPR_2 |
Protein accession | YP_562263 |
Protein GI | 91792612 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3063] Tfp pilus assembly protein PilF |
TIGRFAM ID | [TIGR02521] type IV pilus biogenesis/stability protein PilW |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.146515 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTACGGAT TACAGAAAGT TTGCCTTATC ATTGCCACCC TGTCGTTAAC GACAGGGTGT ATCACTGAAA GCACTTACCG CGGCACTGAT GTTCAGGTCT CTGAACGTAA GTTAGATAAA CTCGCCGCCG CCCGTGAGCG GATGCAGTTA GGACTCACTT ACCTGAATCG GGGTAATCCT GAACAAGCGA AATACAACCT TGATAAAGCC GTCGAATACG CACCAGAGCA CAGCGATGTG TATGTGGCGC TCGCCTATTA TTATCAGACG GTTGGCGATC TTATTCGTAC CGAAGAAGCT TATCAAACCG CCATCAATGC CTCTGATGCC ACTGGCGATG CCAAGAACAA CTTTGGGGTG TTTTTGTGTC AGCAAAAGAA GTACCCTGAA TCAGAAACCA TGATTCTGGC TGCGATTAAT ACCCCTAAGT ACACCCGCAC TGCATCAAGC TATGAAAACT TAGGTTTATG CAGCCGTGCG GCCGGAAAAT TAGAAAAAGC GCGACAGTAT TTTGAGATAG CGTTACAGTA TGACCCAAGA CGAGAAGTCG CCTTATTAGA ATTAACTGAA TTAGCCATAC TTGACGGCAA TTATTCTATG GCGCGAGAGC AATTAGCGCA TTATCATAAT AGGGTCAATG AGTCGCCTCA AAGCTTAGCT TTGGGGATTA AAATTGAGCA GGCCGTCAGT GACTTCGACG CTGCTAAACG ATTTGGTATA GTGTTACTGG CCAAATTCCC CGCATCCACC CAAGCACAAG AATACAGAGC TAATTTGCAG TAA
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Protein sequence | MYGLQKVCLI IATLSLTTGC ITESTYRGTD VQVSERKLDK LAAARERMQL GLTYLNRGNP EQAKYNLDKA VEYAPEHSDV YVALAYYYQT VGDLIRTEEA YQTAINASDA TGDAKNNFGV FLCQQKKYPE SETMILAAIN TPKYTRTASS YENLGLCSRA AGKLEKARQY FEIALQYDPR REVALLELTE LAILDGNYSM AREQLAHYHN RVNESPQSLA LGIKIEQAVS DFDAAKRFGI VLLAKFPAST QAQEYRANLQ
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