| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1093 |
|---|
| Symbol | |
|---|
| ID | 4017376 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 1253674 |
|---|
| End bp | 1254489 |
|---|
| Gene Length | 816 bp |
|---|
| Protein Length | 271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637955085 |
|---|
| Product | MscS mechanosensitive ion channel |
|---|
| Protein accession | YP_562104 |
|---|
| Protein GI | 91792453 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0668] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.746887 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGACT CACGTAAAGC ATTACAAGCC ATGCTAGAGA TTATCTCTTG GGAGAAATTG
CTGGCGGTGC TTATCATCTG TGCACTGGCC TGGTTATTTT TAGTCTTAGC CCAATATGCC
TTGGTAAAAT TAACCCTAAA ACTGCCAAAA TACCGCTTAT TCTTGAGTCG CCTCTACCCC
TTTATTCGCT TGTTTGTCTG GGGCGCTGTT ATCGCTTACG CCATCATAGG CATACTCGAC
CCCCATGAAA ACTTAGTACT CGCGGTTATT GGCTCAATCA GTATAGTCAT AGGTTTAGCC
ACCCAAGAGC CGGCTAAGAA TATGATTGCG GGCTTTATTA TTATGCTAAA TCCCCCCTAT
CGCGTCGGTG ACATGGTGAC ACTCTCGGGC CACTATGGTG AAGTGATAAA GCTTGAATGG
AGTGTCACTT GGCTTAGGAC ATTCGATGAT AACACTGTTA TGGTGCCAAA CGCTGAAGCC
TTAAAAACTG CGGTTTCAAA TTCTAATAGC GGCGCTTTAG ATGAGATGGT GGTGATCAAT
TTTAAGTTGC CAGTGAATGT GGATCATAAT CATGCTTGCG CCCTTGCAAG GGAAGCCACC
CAGTGCTCGC CTTATACCTT TTTGAACAAA CCCATCAGGG TAATACTCGG TACAGATCAC
AGCTTCGGCC AGCATTTAAT CTCGCTGACC ATTAAAGCCT ATGTGATGGA TGTCAGATTA
GAGCGAAAAT TTGCCAGCGA TATTAATAAT CGGGTACTGA CGGCATTCAA ACAGGCGGGC
CTGTATGATA ATGGGCAAGA CTCATCCAAG CAGTGA
|
|---|
| Protein sequence | MEDSRKALQA MLEIISWEKL LAVLIICALA WLFLVLAQYA LVKLTLKLPK YRLFLSRLYP
FIRLFVWGAV IAYAIIGILD PHENLVLAVI GSISIVIGLA TQEPAKNMIA GFIIMLNPPY
RVGDMVTLSG HYGEVIKLEW SVTWLRTFDD NTVMVPNAEA LKTAVSNSNS GALDEMVVIN
FKLPVNVDHN HACALAREAT QCSPYTFLNK PIRVILGTDH SFGQHLISLT IKAYVMDVRL
ERKFASDINN RVLTAFKQAG LYDNGQDSSK Q
|
|---|
| |