Gene Sden_1078 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_1078 
Symbol 
ID4016794 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand+ 
Start bp1233883 
End bp1234497 
Gene Length615 bp 
Protein Length204 aa 
Translation table11 
GC content45% 
IMG OID637955070 
Productlysine exporter protein LysE/YggA 
Protein accessionYP_562089 
Protein GI91792438 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1280] Putative threonine efflux protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTATTG AAGTTTGGCT TTCATTTGTA TTAGCATCGA CTATCTTGTG TTTCTCTCCA 
GGACCCACGG TTTTTATGGT CATGGGGCAA TCATTGACTC AGGGTAAGGC ATCGGTGATC 
CCTTTGGTCA CTGGAGTGCT GTGTGGTGAT GTGATTGCCA TGAGCGTATC TTTCGCCGGG 
CTAGGTGCGC TATTGGCAAC CTCTGCGGTG TTCTTTAATA TTTTCAAATG GGTCGCCGCT 
GGCTATTTAA TGTATCTTGG TGTGAAGGCT TGGCGCAGTA AGCAGAAAGT GGACACTAGC 
CTTGCTGATA AGACACAGCA GGGGAAAATG TTCAAACAAG CCTTGGTAGT CACCGCCTTA 
AACCCTAAAG GGATCATTTT CTTTATCGCT TTTTTCCCTT TGTTCATCAA TACACAGCAG 
CCAGTATCAG CACAAATACT GACCATGGCC GTGTCTTTCT TGATGGTCTC AGCGTTTAGC 
GCGTCATGTT ATTCAATATT TTCAGGCTAT TTACGCAGTA AAATTAATTC ACCACAGTGT 
CAGCAAGGGT TTAATAAACT CAGTGGCTCA ATGTTAATGG GGGCCGGGGT TGTGACGGCA 
ACATTGCACA AATAA
 
Protein sequence
MSIEVWLSFV LASTILCFSP GPTVFMVMGQ SLTQGKASVI PLVTGVLCGD VIAMSVSFAG 
LGALLATSAV FFNIFKWVAA GYLMYLGVKA WRSKQKVDTS LADKTQQGKM FKQALVVTAL 
NPKGIIFFIA FFPLFINTQQ PVSAQILTMA VSFLMVSAFS ASCYSIFSGY LRSKINSPQC 
QQGFNKLSGS MLMGAGVVTA TLHK