| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0887 |
|---|
| Symbol | |
|---|
| ID | 4016988 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 1012252 |
|---|
| End bp | 1014066 |
|---|
| Gene Length | 1815 bp |
|---|
| Protein Length | 604 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637954877 |
|---|
| Product | peptidase M24 |
|---|
| Protein accession | YP_561898 |
|---|
| Protein GI | 91792247 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0006] Xaa-Pro aminopeptidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAACC CAAGCAGCCA AGTAATCGCC GAGCGCCTAA GCGCCATACG CCGCCAATTA
AAATCAGCCC AAGTCGATGC CTTTATTATT CCCCGTGCCG ATGAATACCT TGGCGAATAC
GTGCCTGAGC GCAACGAGCG TCTGTACTGG GCCACTAACT TCACCGGTTC GGCCGGTATG
GCCATTGTAC TAACGGATAA CGTACTTGCG GGCAAAGCCG CTATTTTTAC CGACGGCCGT
TATACAGTGC AAGTCCCCAA ACAGGTGGAT GCTAGCTTGT ATGAGTACCT AAGCCTTACC
GACACACCGC AAATTCAGTG GTTAATCGAT ACCCTAAGCC CAGGTGCCAA AATTGGTATA
GACAGCCGTT TGCACACCTT AGCCTGGTTT GATAACGCCA AAGCCCTGCT TGAAAAGCAT
CAAATGAGCC TAGTGGAATT GGCCAGCAAT CCAGTGGATG ACAACTGGCA TGACAGACCT
GCGCCTTCTA AAGCCATGAT AACCTTGTTT AGCCATCAAG GCGCTGGCAG AGACAGTGTT
GAAAAACGTC TGCAAGTGGG TCAATTAGTC AAAAAGCAAG GCGCCGATGT GGCGCTGATT
TCGGCGCTAG ATTCGTTTTG CTGGCTGCTG AATATTCGTG GCGGTGATGT GCCGCGCTTA
CCCGTCACTT TAGGCTGCGC CTTATTGTCA GCCAATGGTG ATATGAGTGT GTTTGTTGAT
TTAGACAAGT TGCCAGAAGG TATTCATGAG CATGTGGGCG CGGGAGTGAG CTTTAGGCCT
GAAACTGAGC TTGCCCAAGC CCTAAGTGAT TTAAACGGCG TGAAGTTACT TGCCGATCCC
AATTCTGCCA ATGCCTGGTC TCAACGTTTA GCCCTTAAAG GCGGCGCCAA ATTAGTCGCT
GGACTCGATC CTGTCGCCCT GCCTAAGGCC CAGAAAAACA GCGCCGAGCT TGCTGGCATG
CGCGCAAGTC ATGTACGTGA TGGCGTTGCC GTGAGCCGCT TCTTAGCTTG GCTGGATGCC
GAGGTCGCTA ACCATAAATT ACACCATGAA GGCGTGCTGG CGGATAAATT AGAGAGCTTT
CGCCTAGAAG ACCCGCTATA TCGTGAGCCA AGCTTTGATA CCATTTCAGC CACAGGCGCC
AATGCCGCCA TGTGTCACTA CAACCACGCG GATGGCACCC CAGCTCAAAT GACCATGGAC
AGCATCTACT TAGTGGATTC TGGCGCCCAG TACTTAGATG GCACCACGGA TGTGACTCGC
ACCGTCGCTA TCGGCAAGGT CACCGATGAG CAACGTAAGA TGGTGACCTT AGTGCTTAAG
GGCCATATTG CCTTAGATAC TGCCCGCTTC CCCAAAGGCA CTAGCGGTCA GCAGCTGGAT
GCCTTGGCGC GTCAATACCT ATGGCAGCAT GGGTTTGATT ACGATCACGG TACGGGTCAT
GGCGTAGGGC ACTTCTTAAA TGTCCATGAA GGCCCCCAGC GCATAGGTAA AAATGTCAAT
AACGTGGCCT TGTTGCCTGG CATGGTGCTC TCCAATGAGC CTGGCTATTA CCGCGCTAAT
GAGTTTGGTA TTCGCATCGA AAACTTAGTG GCCATCATTC CCTGTGAAGC CCTTAAGGGA
GCGGAGCGTG AAATGTATCA ATTCGATGCC TTGACCTTAA TCCCCATTGA TGTGCGCTTA
ATTGATAAAA CCCTGCTGAC AGAGTTCGAG GTGAACTGGC TCAATGATTA TCACAGCCAA
GTCTTCACCA CGTTAGCGCC ATTAATGCCA GAGGCAGAAC TTGGCTGGCT AAAACGTGTG
ACCAAAGCCA TTTAA
|
|---|
| Protein sequence | MSNPSSQVIA ERLSAIRRQL KSAQVDAFII PRADEYLGEY VPERNERLYW ATNFTGSAGM
AIVLTDNVLA GKAAIFTDGR YTVQVPKQVD ASLYEYLSLT DTPQIQWLID TLSPGAKIGI
DSRLHTLAWF DNAKALLEKH QMSLVELASN PVDDNWHDRP APSKAMITLF SHQGAGRDSV
EKRLQVGQLV KKQGADVALI SALDSFCWLL NIRGGDVPRL PVTLGCALLS ANGDMSVFVD
LDKLPEGIHE HVGAGVSFRP ETELAQALSD LNGVKLLADP NSANAWSQRL ALKGGAKLVA
GLDPVALPKA QKNSAELAGM RASHVRDGVA VSRFLAWLDA EVANHKLHHE GVLADKLESF
RLEDPLYREP SFDTISATGA NAAMCHYNHA DGTPAQMTMD SIYLVDSGAQ YLDGTTDVTR
TVAIGKVTDE QRKMVTLVLK GHIALDTARF PKGTSGQQLD ALARQYLWQH GFDYDHGTGH
GVGHFLNVHE GPQRIGKNVN NVALLPGMVL SNEPGYYRAN EFGIRIENLV AIIPCEALKG
AEREMYQFDA LTLIPIDVRL IDKTLLTEFE VNWLNDYHSQ VFTTLAPLMP EAELGWLKRV
TKAI
|
|---|
| |