| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0255 |
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| Symbol | |
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| ID | 4020366 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 292281 |
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| End bp | 294878 |
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| Gene Length | 2598 bp |
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| Protein Length | 865 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637954237 |
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| Product | penicillin-binding protein 1A |
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| Protein accession | YP_561274 |
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| Protein GI | 91791623 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
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| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTTTAC TTCACCTCCT TCATTCACGC TTATATACTA ACGCTTCTAT TTTTTGTTTC
TGGGATTTCA GGTTGAAGTG GTTTAAACGA TTTATCATAG CCCTATTTAG TCTAGCCTTG
CTCGGTATAG GTACCATTAC CGCCGCATAT TTTTACGTGC TACCTGAATT GCCTGATGTA
ACCACACTCA AAGACATTCA GCTGCAAACG CCGCTGCGAA TTTACAGCAG TGATGGCAAG
TTGATCTCGC AATTTGGCGA GAAACGCCGT ATCCCCCTTA AACTCGAAGA AGTGCCTAAG
CCATTAATCC AAGGGTTTTT GGCCATCGAA GACACCCGTT TCTATGAGCA CAAAGGCATA
GACCCCATTG GCGTGCTCCG CGCCGCTTTC GTCATGATAG CGACCGGCGA GAAGAAACAG
GGTGCCAGTA CCATCACTAT GCAAGTGGCG CGTAATTTCT TCTTAACCCG TGACAAGACC
ATTATTCGTA AGGTGAAGGA AATATTTATT TCTTTGCATA TAGAGCAGCT GCTCAGCAAG
GATGAAATTC TCGAACTTTA TGTTAACCGC ATTTATTTAG GTCAAAGAGC CTACGGTGTT
GGCGCCGCAG CGCAGGTTTA TTTCGGTAAA GAAGTGCAAA ACCTAACCTT GGCTGAAATG
GCGGTTATTG CAGGCTTACC CAAAGCACCT TCGACATTAA ACCCTATCAC CTCTGCGACT
CGCGCCTTGG CAAGGCGCAA CTTAGTCTTG ATGCGTATGC ATGAGGTGGG CTTCATTAAC
CAGTTTGAAT ACCAAGACGC GCTGTCTCAA CCTATTACCG CCTCTTACCA CGGCGCCGAA
ATTGATCTTT ATGCCCCTTA CATCTCTGAG ATGGCCCGCG ATTACATGGT GCAAAAATAC
GGCGAAGAAG CTGCTTACAC TAATGGCTAT AACGTCTACA CCACGATTTC ATCTGACCTA
CAGCTGATGG CCCAAGATGC ATTGCGGGAT AATGTGTTTG CCTATGATGA ACGCCATGGC
TATCGCGGCC CAGCTGCGAC TCTATGGGCA ACGCAGCAGC CGAGCACAGA AGAAATCACT
AGCGTGTTGA ATAAGACTGC CTCAGTTCAG GGCATTATTC CTGCTGCGGT ATTGAGCGTC
ACTGAGCAGC AAGCTAAGGT CATCGATGCT CAAGGGCAAG AAATAACTCT TGAATGGCAA
GGCCTTAAGT GGGCTCGCAA GTTTATCAAC GATAAGCGTC AAGGTAATCC ACCTAAAACC
GCGGCGGAAA TTTTAACCCC AGGTCAGCAA GTCTGGATCA GGAATAATGG CGAGTTTTGG
CAGTTATCCC AACTTCCAGA AGTGTCCAGT GCCACTGTGT CTTTGGACCC TAAAAATGGT
GCGATCCGCA CGCTTGTAGG TGGATTTAGT TTCAGCCAAA GTCAATACAA CCGTGTGACT
CAGGCAAAAC GTCAATTAGG TTCGAACATC AAGCCTTTCA TCTATGCCGC CACCTTAGAA
AAAGGCTACA CCTTAGCGAC CTTGATCAAT AACGCGCCAA TTAATAAGCC GGATACTCGT
CAAGGCACGG CATGGCGCCC GAAAAACTCT CCAGATATCT ACGGAGGACC GACGCGTTTA
CGTGTGGGTT TAGCTCAGTC TATCAACGTC ATGTCTGTGC GCGCGATGCG ACATGTAGGC
ATACCCGCCA CAATAAAAAA ACTCACCGAG TTTGGTTTCG ATGCCAGTGA TTTACCTAGC
AATGAATCTT TAGCCTTGGG GTCCCCTTCG GTAACCCCAC TGCAAGTGGC CGCAGCTTTT
AACGTCTTCG CCAACGGTGG TTATTTGGTT GAACCTTATT TCATCGATAA AGTTACCGAC
GCCTTCAGTA CGGTTATCGA AGAAGCGAAC CCGACGTTAG CTTGTACACC AGCGGCGCCA
ACCTCAGACG CTAACCCGGC CTATGATGAA TTTGGCGCTC AAACAAGCAC CATGAACCAA
GTGGATGGAC AGAGCCAATG CGGTAACGAC ACATCCCGCT TTGCCCCTCA AGTTATCTCT
GAGCAAACAG CCTTCCTCAT CACCGAAGCC CTCAAGAGCG TGATTTGGGG CGGTGGCGAC
TGGAAGCACG GTACAGGTTG GCAAGGCACG GCATGGCGAG CGGCACGCTT AATTAAACGC
CATGATATTG CAGGTAAAAC CGGTACCACT AACGAAGCTC GAGATACTTG GTTCAGTGGT
TTCGGCCCGA CGCTCACCAG CACCTTCTGG GTTGGATTTG ACGATCATAG ACGTCAGCTT
GGCCGCACCA GTTGGTTGGC GAATGGCCCT TCCGATCAAA TATCGGCGGG AGAAGCCGGT
GCTAAGACTG CAGGCCCTGG CTGGAATGAC TTTATGAATA AAGCCCTGAA AGGCGTGCCA
GAGGTTGCAG TGGTGCCGCC AAAGGGCATA GTCTCGGCTC GTATCGATTT AGCCACGGGC
AAGCTCACTC GTAAAACCGA CCACACGACA GCATTTGAGT ATTTTGCCGC CGGCACCGAG
CCCAAAGAAT ATGTCGCTGA CACACCGCAA CATGACACTA ACTTTACAGA TAATCCTGCG
GAAGACTTAT TTCAATAA
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| Protein sequence | MFLLHLLHSR LYTNASIFCF WDFRLKWFKR FIIALFSLAL LGIGTITAAY FYVLPELPDV
TTLKDIQLQT PLRIYSSDGK LISQFGEKRR IPLKLEEVPK PLIQGFLAIE DTRFYEHKGI
DPIGVLRAAF VMIATGEKKQ GASTITMQVA RNFFLTRDKT IIRKVKEIFI SLHIEQLLSK
DEILELYVNR IYLGQRAYGV GAAAQVYFGK EVQNLTLAEM AVIAGLPKAP STLNPITSAT
RALARRNLVL MRMHEVGFIN QFEYQDALSQ PITASYHGAE IDLYAPYISE MARDYMVQKY
GEEAAYTNGY NVYTTISSDL QLMAQDALRD NVFAYDERHG YRGPAATLWA TQQPSTEEIT
SVLNKTASVQ GIIPAAVLSV TEQQAKVIDA QGQEITLEWQ GLKWARKFIN DKRQGNPPKT
AAEILTPGQQ VWIRNNGEFW QLSQLPEVSS ATVSLDPKNG AIRTLVGGFS FSQSQYNRVT
QAKRQLGSNI KPFIYAATLE KGYTLATLIN NAPINKPDTR QGTAWRPKNS PDIYGGPTRL
RVGLAQSINV MSVRAMRHVG IPATIKKLTE FGFDASDLPS NESLALGSPS VTPLQVAAAF
NVFANGGYLV EPYFIDKVTD AFSTVIEEAN PTLACTPAAP TSDANPAYDE FGAQTSTMNQ
VDGQSQCGND TSRFAPQVIS EQTAFLITEA LKSVIWGGGD WKHGTGWQGT AWRAARLIKR
HDIAGKTGTT NEARDTWFSG FGPTLTSTFW VGFDDHRRQL GRTSWLANGP SDQISAGEAG
AKTAGPGWND FMNKALKGVP EVAVVPPKGI VSARIDLATG KLTRKTDHTT AFEYFAAGTE
PKEYVADTPQ HDTNFTDNPA EDLFQ
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