Gene Sde_3962 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_3962 
Symbol 
ID3967266 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp4992676 
End bp4993566 
Gene Length891 bp 
Protein Length296 aa 
Translation table11 
GC content44% 
IMG OID637923059 
Productfructokinase 
Protein accessionYP_529429 
Protein GI90023602 
COG category[G] Carbohydrate transport and metabolism
[K] Transcription 
COG ID[COG1940] Transcriptional regulator/sugar kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.177192 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTAATA CTTTAATTGC TGCCATAGAA GCGGGCGGTA CAAAAATTAA TATAAGCGTT 
GGTTATACGG TAGATGAACC ACTTATGGCT ACCCGTATTC CTACCCATAC ACCAAGTGAT
ACTTTGCCAG CTTGTGTCGA TTTTTTACAA ACGGCACAGA ACAAATTAGG TGCTATTAAA
GCATTGGGTA TAGCAAGCTT TGGGCCGGTA GATATAGACA AGCAATCAGC TAGCTATGGC
ACCATTTTAA ATAGCCCGAA ATTAGCATGG TGCGATCAGA ATATTCTAGA AGCATTTAAC
GTATTTGATT GCCCCATAGC ATTGGACACC GACGTAAACG CGGCAGCTTA CGCAGAGCAT
CAGCGATTAG AAAAGAGTAA CTGCAATTCT GTATATATTA CGGTAGGTAC AGGCGTAGGT
GTAGGCGTGG TTATAAATGG CGCAACGCTT ACGGGTGAGT TACACCCAGA GCTAGGCCAT
TGCTACAGCG AACGATTGGC AATAGAACCA AAAGGAGTTT GCATTAGGCA CGGCGATTGT
GTTGAAGGGT TAATCTCTGG CCCAGCGTTA AAGCAGCGAT GGAAAATATT ACCAGAAGAG
GCCGAGAGCG ATCACATTAT GTGGGAATCG GTCGGTTTTC ATTTGGCGCG CCTTTGTTAT
ACGGCTACTT TAGCCTACTC ACCCAACAAC ATTATTCTTG GCGGTGGGGT GCTGCAAAAT
ACTTTTATTA TTCCGATGGT ACATAAATAT TTTGCTCATC TTGCAGGTGG ATACCTGCCA
GCGAAAGCAG TGCCACAGAA TTTAGATAGT TTTATTAAGG CGTCTTCCTA TTCCACTGGT
GCTGGCTTAG CTGGCGCATT TCTACTAGCA AGGGAAAATA TTAATGAGTA A
 
Protein sequence
MSNTLIAAIE AGGTKINISV GYTVDEPLMA TRIPTHTPSD TLPACVDFLQ TAQNKLGAIK 
ALGIASFGPV DIDKQSASYG TILNSPKLAW CDQNILEAFN VFDCPIALDT DVNAAAYAEH
QRLEKSNCNS VYITVGTGVG VGVVINGATL TGELHPELGH CYSERLAIEP KGVCIRHGDC
VEGLISGPAL KQRWKILPEE AESDHIMWES VGFHLARLCY TATLAYSPNN IILGGGVLQN
TFIIPMVHKY FAHLAGGYLP AKAVPQNLDS FIKASSYSTG AGLAGAFLLA RENINE