Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3790 |
Symbol | |
ID | 3966864 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 4787218 |
End bp | 4789368 |
Gene Length | 2151 bp |
Protein Length | 716 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637922887 |
Product | ferrienterochelin/colicin outer membrane receptor |
Protein accession | YP_529257 |
Protein GI | 90023430 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.11789 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCGGAA TAACAGGCCG TACACTCCCA CCACACCGTA TACCTAAGGG CATACTGCTC TCCCTGTTTA TTGGTGCATT CAGCCAAACC GCCTACACAA GCGAAAACGA CCCACTATTT GAGCTAAGCC TAGAAGAATT ACTCCAAATT AAAGTGGTTA CTGCAGCTTC GGGCTACGAA CAAAAGCTTG CGGACGCGCC AGGCTCGGTG ACGGTGATTA CCAAGCACGA ATGGCAAGCC GCCGGCGCCC GCGCGCTAGA AGACGTTTTG GATATGGTAC CCGGTGTGCA CATAAGCAAA ACGACAACAG GCTTAGTTGC AAACAAAGCT GTCATACGCG GTATTTCTGG CACATTTGGC CAACAGGTAC TCGTATTAAT AGATGGCGTA CCCATTAAAT ACCGCCAAGA TTCAGGCCAA ACCGTCGGCA GCCGTATAGC CCTAGCCGGC TTTGAGCGTG TTGAAGTTGT GCGCAGCCCT GGCTCGGCCA TTTATGGCGC TGATGCTGTG GGCGGTGTAA TCAACCTTGT GTCAAATAAA CAATTAGATA ACACCCTTAC CCTGCGCACG GGTGAATACA ACACACACGA CATAGAGTGG ACGCACCAAC ACAACTTTGA AGAAGGCGTA TGGCGTATCA CAGCAGCACA CCAACGCAGT GATGACGACC CCGATAAAAT CGCCACAGAC GATTTGCAAA CTGTGTTTGA TAATATATTC GGTACCGATG CCAGCCAGGC ACCGGGAAGA GTAGATGAAC GCTACGCAAT AGATCAAATT AACGCACAGC TAGATTGGCA TAAGTTAAGT TTACAAGTTC ACTACTGGAA CAATAGCGAC AAGGGGGTGG GAAGTGGCGT TGCAGCAGCC TTAGATAACA AAGGTACCGC CAGCCTAACC GATACCCAAT TTAATGCCAG TTATAACCTG TATAACGATG CACAGCAATC GCTAGCGTTT AACGGCGCCT ACAACAAACA GCAATCGCGC ACATTCTTAT ATGTTTTTCC TGCGGGCACT CAATTGCCCA TAGGCGCAGA TGGCAATATT GATTTTAACG AGCCGGTTAA CGTTGTTACA TTTACCGATG GCTATATAGG CACCCCAGGC AACAATGCTA GCGCTACCGA TGTAAACGCC ACTTATCTTG TACACTTAGG CAAACACGAT ACCCGTGTTC AGATTGGCTA CCAAACACAA TCCTACAAAG CCGTAGAGCG CAAAAATTTC GGCCCCAGCA TTATAGATGG CAGCCAAACC GTGGTAGACG GAACGCTGAC TGATGTGAGC AATACACCTT ACGTTTATAT TCCACCATCT GATCGAGATT TAACATACCT ATCGATTGAA GATACTTGGC AAATTAGTAG TGACTTTCGC GCCTCTCTTG GCATGCGCTA CGACCAGTAT TCCGACGTTG GCAGCACCTT TAACCCGCGT ATAAATTTGC AATGGCAAGC ATCAAAAAAT ATTACATTTA ACACCTATGG CGGCACCGCC TTTAGAGCGC CATCGTTTAC AGAGTTGTAC GCGCAAAACA ACCCAGCAGG CGTAGGTAAC CCCAGCTTAA AGCCCGAAAA AGCGCGCACT TTTCAAAGCG GTATTAACAG CACTATACGC TTCAATAAAT CGACTGATGT AACCGTTAAT ATTTACCAAT ACAAAATAAA CAATATTATT GAATTTGTAA GCCAAGCAGA AAGCGGCATT CAACTGGCCA GCAATACCGG TGAACAGGCC GGTTGGGGTT CAGAGTTAAT CGCCAATTGG CAATTTGATA AAAAATTGCT CATTAAAGGC CATTACAGCT ACTTAGATGC GCGTGATAAA TTCGATAACC GTTTATCCGA TGTCCCGGTA CATACCTTTT ATATTCAAGG CCACTATAAA CTCGCAACCC ACTGGCAGCT ATTTGCGAAA AGTAAATGGC TATCTGAACG CTCGCGTAAA CCTGGCGACC CACGCGAAGC GCTAGAAGGC TACAACATAA CGTCGTTAAA TCTTGCTTGG GCACAATCAC GCTATAGCGC TGCCTTGAGC ATAAGCAACG CTTTTGACAC AGACGCTCGC GAGCCAAGTA CAGGCAGCCT GCCAGATGAT TACCCATTAT CTGGTAGGCA TGCAATGCTT TCTGTTAGCT ATAGCTATTG A
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Protein sequence | MIGITGRTLP PHRIPKGILL SLFIGAFSQT AYTSENDPLF ELSLEELLQI KVVTAASGYE QKLADAPGSV TVITKHEWQA AGARALEDVL DMVPGVHISK TTTGLVANKA VIRGISGTFG QQVLVLIDGV PIKYRQDSGQ TVGSRIALAG FERVEVVRSP GSAIYGADAV GGVINLVSNK QLDNTLTLRT GEYNTHDIEW THQHNFEEGV WRITAAHQRS DDDPDKIATD DLQTVFDNIF GTDASQAPGR VDERYAIDQI NAQLDWHKLS LQVHYWNNSD KGVGSGVAAA LDNKGTASLT DTQFNASYNL YNDAQQSLAF NGAYNKQQSR TFLYVFPAGT QLPIGADGNI DFNEPVNVVT FTDGYIGTPG NNASATDVNA TYLVHLGKHD TRVQIGYQTQ SYKAVERKNF GPSIIDGSQT VVDGTLTDVS NTPYVYIPPS DRDLTYLSIE DTWQISSDFR ASLGMRYDQY SDVGSTFNPR INLQWQASKN ITFNTYGGTA FRAPSFTELY AQNNPAGVGN PSLKPEKART FQSGINSTIR FNKSTDVTVN IYQYKINNII EFVSQAESGI QLASNTGEQA GWGSELIANW QFDKKLLIKG HYSYLDARDK FDNRLSDVPV HTFYIQGHYK LATHWQLFAK SKWLSERSRK PGDPREALEG YNITSLNLAW AQSRYSAALS ISNAFDTDAR EPSTGSLPDD YPLSGRHAML SVSYSY
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