| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3565 |
|---|
| Symbol | |
|---|
| ID | 3966427 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 4523384 |
|---|
| End bp | 4524052 |
|---|
| Gene Length | 669 bp |
|---|
| Protein Length | 222 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637922662 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_529032 |
|---|
| Protein GI | 90023205 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 43 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.576229 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTTGTT CTAATGGGCA GTTAAAGCGC GCGCTTACCC TATGTTGCGC ATTGGCGTTA
TTAGTTGTTG CGGGTTGTAC ATCTTCGCCG AGCAAGAAAG ACGAAGCCGA GCAAGCGGCA
ACAGCCGAAG GCGAGGAAAC CCCATTTGTG TTAATTCCAA GCCCCTACCA ACCCAAGGGT
TCTGCACCTA GCCAGGCGAA AAAAGAGTTT GCTGCCGCGC AAACCGCGAT GAAAGAAAAA
CAATGGCAGC AGGCAGAAAA CATATTGCTG TTAATGACTG AGACTTACCC AGAGTTATCT
GGCCCGTATG TGAACCTAGG TATTGTTTAC CTGCAAACCA AACGCTACGA AGAAGCGGTT
AAAGCGCTTG AGTTCGCGAT AGAAACCAAC CCTACCAATA TGGATGCTTA CAGTCAGTTG
GGTTTGGCGT ACCGCGAGCA GGGCCTATTT GAGCAGGCGG ATATGGCCTA CCAAAGCGCC
TTGGAGGTAT GGCCGCACCA CGCAGATTCA CTTAAAAACT CCGCGATACT CTACGATTTA
TATTTAGGTA AATTGCCTGA AGCGCTAGAG CGCTATAAAT TATTGGCGCA AATTCAGGGC
GAGCCAACGC GCGAGCTTAA AGGCTGGATT ATCGACCTCG AGCGACGCAT CGCCAATGGA
GACGATTAA
|
|---|
| Protein sequence | MLCSNGQLKR ALTLCCALAL LVVAGCTSSP SKKDEAEQAA TAEGEETPFV LIPSPYQPKG
SAPSQAKKEF AAAQTAMKEK QWQQAENILL LMTETYPELS GPYVNLGIVY LQTKRYEEAV
KALEFAIETN PTNMDAYSQL GLAYREQGLF EQADMAYQSA LEVWPHHADS LKNSAILYDL
YLGKLPEALE RYKLLAQIQG EPTRELKGWI IDLERRIANG DD
|
|---|
| |