| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3422 |
|---|
| Symbol | |
|---|
| ID | 3966148 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 4355902 |
|---|
| End bp | 4356777 |
|---|
| Gene Length | 876 bp |
|---|
| Protein Length | 291 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637922519 |
|---|
| Product | response regulator receiver domain-containing protein |
|---|
| Protein accession | YP_528889 |
|---|
| Protein GI | 90023062 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3279] Response regulator of the LytR/AlgR family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 49 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.00728631 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGAGTAAAC AATTACCAAA TGCCGAGCGG CTAAAAAATA ACTTTATTAC ATACCCTAAT
CGGTGGGCTA TTGGCCTTCT TTCAGCGTGG ATGCTATTGA ATACCTTGGT GTTAGCTACC
ACCGATTTGA TGGAGGCTAA ACGTGTTGGT AGAGAGTTAG CCGTGTGGGA ACCCTTTTGC
TGGGAGTTAA GCAGTATTGT GCTTATTGTT TTGGCGGTGT GGCCCATAGC GCGCATCGAC
GAAAAGTTAA AAGCCAAGCT GCCGCTACTG GGTGTGTGCG CTGCCCATGC TGCCCTTGTT
ATACCTTTCT CGGTTATACA TGTGACGGGT ATGGTGTGGC TAAGAAAGCT ATGTTACTGG
CTAGTAGGGT GGGAGTATAA GTTTGGTAAT GTGGTTTACG AGTTTTTATA TGAATTGCGT
AAGGATGCAA TGACCTACAT CACTATTTTA ATTGTAATAA ATTGCTTTCA GTTTATTGTG
CGCCGGCTAC AAGGGGAGGC GAGCTATGTG CAAGAAAGTG AAACAAGTAC AAAACCAATA
CCCGATAGAT TGTTGGTTAA AAAGCTAGGC AAAGAATTCT TAATTTCCGT GGCAGATATA
GACTGGGTTG AAGCCAGCGG CAACTATGCG AATTTGCACG TTAAAAACAG TGTTTACCCT
ATGCGCATTA CTATGACGAA GTTAGAGCGA TTGTTACCGG AGGGGGTATT TAGTCGCGTG
CACCGTTCCG CTATTGTGAA TATAAATCGG GTGACGCATT TGCAGCCGCT CGATTCGGGT
GATTACACTA TTTATTTGGC AAGTGGAGCA GAAGTCTCAC TGTCGCGACG CTACCGCGAT
AATTTTCGCG CAACGAGTGC AACTGCAGCA GGTTAA
|
|---|
| Protein sequence | MSKQLPNAER LKNNFITYPN RWAIGLLSAW MLLNTLVLAT TDLMEAKRVG RELAVWEPFC
WELSSIVLIV LAVWPIARID EKLKAKLPLL GVCAAHAALV IPFSVIHVTG MVWLRKLCYW
LVGWEYKFGN VVYEFLYELR KDAMTYITIL IVINCFQFIV RRLQGEASYV QESETSTKPI
PDRLLVKKLG KEFLISVADI DWVEASGNYA NLHVKNSVYP MRITMTKLER LLPEGVFSRV
HRSAIVNINR VTHLQPLDSG DYTIYLASGA EVSLSRRYRD NFRATSATAA G
|
|---|
| |