| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3211 |
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| Symbol | |
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| ID | 3965684 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 4088258 |
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| End bp | 4090786 |
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| Gene Length | 2529 bp |
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| Protein Length | 842 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637922308 |
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| Product | bacteriophytochrome-like protein |
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| Protein accession | YP_528680 |
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| Protein GI | 90022853 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.880007 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTACAG ACGAACAGCC CCAATCGAGT GCGAACGGGC TAAAGCTTAA CTCTGCCATC
CGCCTTATAG AATTATTTCA CAGCCCAATT ACGGCGTGGG TTGTGCTTGG TTTATCCCTC
GCTATAACCG TTGTGGCGTA TATTATTACT AGCTCTGCGG TAAAAGAACG CGCCAAAGAC
AGATTCGAAT ACCAAACAAT TCGTACTGAA AACGCAATAA AAGAACGGCT TTACCTCTAC
GAGCAAGTAC TCTGGGGTGG AGTCGGTCTC TTCAACGCGA GCACAGAGGT AACGCGTGCC
GACTACGCCA ATTACGTAAA GGCGCTACAG CTCGACACGA AATGGCCTGG CGTACAAGGC
ATTGGCTATA GCATTCCCAT CGAAGCTAGC CAGCTAGAAG CACACATTGA GGCAATGCGC
GCCCAGGGGT TCCCAGAGTA CACGGTAAAA CCAACCGAAC CGCGCGAAGA GTACTCGGCG
ATAATCTACT TGGAGCCGTT TGACTGGCGC AATCAACGCG CCTTTGGCTA CGACATGTGG
TCTAACCCTA TGCGTCGCGA AGCCATGGCC CGCGCACGCG ATAACGCAGA AGCAGCCACC
AGCGGCATTA TTACTCTCGT GCAAGAAACC GATAACAATG TGCAACGCGG CTTTCTTACC
TATGTTCCCG TATATAGCAC TAGAGTTATC CCCCCTACGG TAGAAGAGCG ACGCACGGCT
TTTTTAGGCT GGGTGTACGC ACCTTTTCGC GCTGGCAACC TTATGCAGGG CATCTTAGGT
TCCGACGATG ATCAAATTCA CTTAGACATT TACGACGGGA AGACCAAGCA GCCAGAATCT
CTGCTCTATA GCAGTGAATC CGCACCGCTT GAGCGCAATA TTCCCGACCT AACCAAAGAA
GTATCTATTA CCCTACAGGG GCGCGAATGG ACGCTTTATT TTCGTGCCGT GCCCAACTAT
TACGAATTAG TAGATAACGG CCACCAACCA GTTTTTATTG CGGTAGGCGG CGTAGCCGTA
AACCTGCTTT TGTTCTACGT TATTTACGCG CTTTACTTTT TAAACAAACG CGCTGAATCG
GTAACGAAAG ATTGGCGCAT GATAATAGAA CAAGCACCCA ATGCACTTAT TATTACCAAC
GAAACCGGTG AAATAGTCGT TACAAACGCC CAAGCAGATA CACTTTTTGG CTACGCCCCC
AATGAGCTGT TAGGGCAAAA AATAGAAGTG CTTGTACCCC ACTCTATTCG CACTGCTCAC
CCAGAGTTAC GCGAGAGTTT TGTAGCAGCC CCCAAAGCTC GCTCCATGGG CGCTGGCCGC
GACCTAACCG CTCAACGAAA AGATGGCAGT GAAGTACCAG TAGAAATTGG CTTAAGCCCG
CTAAATACGC CTCAAGGGCG TTTAGTAGTA GCCTCTATTG TAGACATTAG CGAACGCAAG
CAGGCGCAAC ACACGCTCGA AAAAATTATT GAACAAGCGC CCAATGCGTT AATTATGACC
GACGACAAGG GCACTATCAC CCTTACCAAT ACGCAAGCAG ACCATTTATT TGGCTATAGG
CGCGGTGAAC TCACCGGCCA AAAAATTGAT ATTTTAGTGC CCGAAGCAAA CCGCGCAGGT
CACCCTGCAC ATCGCGACGC TTTTTTTAAA GCGCCGAAAT CCCGATTAAT GGGTGCCGGT
CGCGACCTAG CAGGCCGCGC CAAAGATGGC TCAGAAGTAC CGGTTGAAAT TGGCCTTAAC
CCACTTACAA CGCCCCTTGG CAACTTTGTA GTGGCATCTA TTGTGGATAT TAAAGAACGT
TTACGCGCAC AAAAAATGCT GGAGCATACT AACCGCCAGC TGCAGCAAAA AAACCACGAA
ATGGAGCAGT TTATTTATAC GGTATCTCAC GATTTAAAAT CGCCGCTCGT TACCATTGGA
GGCTTTGCTA AAATGCTATC CACGGGTCTT GCAAATACCG CTACCGATAA ACAAAAACAC
CAACTACAGC GCATTCAAGC CAACGTAGAC CACATGGAAA CGCTGCTTAG TGATTTGCTG
CAGCTTTCGC GGCTAATACG CCAAGGCGTA GACAAAACTG AAGTAGACCT AGAGGCGTTA
CTGGATTCAC TTATTAACAC CCTTGAAGGC CCCATAGAGG CTGTAAATGC CAAAGTGGAA
ATTTGTAAGC CGCTGGCAAT TATTCAGGGT AACGAGCGCC TTATTTCCCA GTGCGTTCAA
AATCTTCTAT CCAACGCTAT CCAATACAAA GATGAACAGC GCCCCCTCAC TATAACCATA
AGCACCTCAG AGCAAGCAGA GAGTGTAAGC CTAATAATTA AAGACACCGC CATGGGCATA
GACGCAAAAT ACCATGAGCA AATATTTAGA ATATTCGAAA GGCTTGATAT TGGCGAAGGG
ACTGGCGTAG GCTTAGCAAT TGTAAAAACG GTCATGGAAA AACACTCTGG CCAAGTGGTT
TTAGAATCGG AATTGGGTAA GGGCAGCACA TTTACATTGG TCTTCCCCAA ACAAAAAAAT
AAGGACTAA
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| Protein sequence | MPTDEQPQSS ANGLKLNSAI RLIELFHSPI TAWVVLGLSL AITVVAYIIT SSAVKERAKD
RFEYQTIRTE NAIKERLYLY EQVLWGGVGL FNASTEVTRA DYANYVKALQ LDTKWPGVQG
IGYSIPIEAS QLEAHIEAMR AQGFPEYTVK PTEPREEYSA IIYLEPFDWR NQRAFGYDMW
SNPMRREAMA RARDNAEAAT SGIITLVQET DNNVQRGFLT YVPVYSTRVI PPTVEERRTA
FLGWVYAPFR AGNLMQGILG SDDDQIHLDI YDGKTKQPES LLYSSESAPL ERNIPDLTKE
VSITLQGREW TLYFRAVPNY YELVDNGHQP VFIAVGGVAV NLLLFYVIYA LYFLNKRAES
VTKDWRMIIE QAPNALIITN ETGEIVVTNA QADTLFGYAP NELLGQKIEV LVPHSIRTAH
PELRESFVAA PKARSMGAGR DLTAQRKDGS EVPVEIGLSP LNTPQGRLVV ASIVDISERK
QAQHTLEKII EQAPNALIMT DDKGTITLTN TQADHLFGYR RGELTGQKID ILVPEANRAG
HPAHRDAFFK APKSRLMGAG RDLAGRAKDG SEVPVEIGLN PLTTPLGNFV VASIVDIKER
LRAQKMLEHT NRQLQQKNHE MEQFIYTVSH DLKSPLVTIG GFAKMLSTGL ANTATDKQKH
QLQRIQANVD HMETLLSDLL QLSRLIRQGV DKTEVDLEAL LDSLINTLEG PIEAVNAKVE
ICKPLAIIQG NERLISQCVQ NLLSNAIQYK DEQRPLTITI STSEQAESVS LIIKDTAMGI
DAKYHEQIFR IFERLDIGEG TGVGLAIVKT VMEKHSGQVV LESELGKGST FTLVFPKQKN
KD
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