| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3068 |
|---|
| Symbol | |
|---|
| ID | 3965411 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 3921308 |
|---|
| End bp | 3921841 |
|---|
| Gene Length | 534 bp |
|---|
| Protein Length | 177 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637922165 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_528537 |
|---|
| Protein GI | 90022710 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4430] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 42 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0120181 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTATTA CGTTTAAAGC CAAGTTGTGC CAAGCTGCGG GCCATACTGC TGGTAATTTA
TGGGCCTTTA TTGTTTTTCC AAAAAGCGCG AGCGATAAAT TGCCGCGCAG GGGCCGTACC
AGCGTAGAGG GTACTATTAA TGGCCACGCA TTTAGCGCAA CACTTCAGCC AGACGGTAAG
CTAAGCCATT GGCTGCAGGT AGATGGTGAA TTGCTACAAG CGTTAAGTAA CAGTGTTGGA
AAGAAAGTGG ATGTGGCATT TACCCCTGTA GCGACAGAGC CCGAGCCACA GGTGCCAGAA
GATTTAAGTG ATGCGCTAGC GGCCACACCA GCAGCACTGG AAAACTGGCA GCAAACAACG
GTAATAGCAC GTGTAGATTG GATACACTGG GTAGAGTCTG CTAAGCAGGC GAAAACACGG
GTAAAGCGAA TAGCCAATGC GTGCGATATG TTGGCTAGCG GCAAACGAAG GGTGTGTTGT
TTCGACCAGT CTGGCTTTTA TAGCAAAGCG CTATGCGCCC CAAAAGAAGC TTAG
|
|---|
| Protein sequence | MSITFKAKLC QAAGHTAGNL WAFIVFPKSA SDKLPRRGRT SVEGTINGHA FSATLQPDGK
LSHWLQVDGE LLQALSNSVG KKVDVAFTPV ATEPEPQVPE DLSDALAATP AALENWQQTT
VIARVDWIHW VESAKQAKTR VKRIANACDM LASGKRRVCC FDQSGFYSKA LCAPKEA
|
|---|
| |