Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3055 |
Symbol | |
ID | 3967660 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 3907844 |
End bp | 3908635 |
Gene Length | 792 bp |
Protein Length | 263 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637922152 |
Product | putative deoxyribonuclease |
Protein accession | YP_528524 |
Protein GI | 90022697 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0084] Mg-dependent DNase |
TIGRFAM ID | [TIGR00010] hydrolase, TatD family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 40 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.00078525 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGCTGGCCA AAAACATGAT AGATACTCAT TGTCATATAG ACTTCCCCAA ATTTGATGCA GACAGGCAAG CAGTATTGGC CAGTAGCTTA CGCGCGGGCG TGCAAAAAAT AGTGGTGCCA GGGGTAAGTG CAAGCCAGTG GCCAAAAATA CAAGCGCTAA TTGAACAAAC CCCCTCGTTA TATTTTGCCG TAGGTGTGCA CCCTTGGTGG GTGAATCAAT CGGTAATTGC TAAGTTGGAA TCGCTAGAGA GCGAAATAGC GACATTTTTA TCGCACAAAA AATGTGTTGC CGTTGGGGAA TGTGGGTTAG ATAAGCTGTG CGATGTGCCC TTTGAATGGC AAGTTGATGT GCTTAATTAT CATATTGAAT TAGCCAAACG CTTTTGCAAA CCCATTATTT TACACAGTGT GAAAGCCCAC AATGCGACGT TGGTACATTT AAAAAATGGT GCGTTAACGC ACGGTGGTGT AGTACATGCA TTTAGCGGAA GCACACAAGA AGCCGACCAA TATTGGCAGC AGGGGTTTTA CTTAGGTATA GGTGGCACCA TTACTTACCC AAGGGCAAAT AAAACCCGCA AAGCCGTAGC CGCTATGCCA TTAGATGCGT TGCTACTAGA AACCGATGCA CCGGATATGC CAATGAACGG CCGCCAAGGG CTGCGCAATA GCCCAGAGTA TTTACCCGAA GTGGTAGCAG TAATTGCCGA GCTAAAAAAT ATTAGCCCTA GCGAAGTTAT AGCAGCCACT ACGGCCAACG CGCAGAAGTT GTTCAATTTT AACGGTGACT AA
|
Protein sequence | MLAKNMIDTH CHIDFPKFDA DRQAVLASSL RAGVQKIVVP GVSASQWPKI QALIEQTPSL YFAVGVHPWW VNQSVIAKLE SLESEIATFL SHKKCVAVGE CGLDKLCDVP FEWQVDVLNY HIELAKRFCK PIILHSVKAH NATLVHLKNG ALTHGGVVHA FSGSTQEADQ YWQQGFYLGI GGTITYPRAN KTRKAVAAMP LDALLLETDA PDMPMNGRQG LRNSPEYLPE VVAVIAELKN ISPSEVIAAT TANAQKLFNF NGD
|
| |