| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3002 |
|---|
| Symbol | |
|---|
| ID | 3967763 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 3826588 |
|---|
| End bp | 3828480 |
|---|
| Gene Length | 1893 bp |
|---|
| Protein Length | 630 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637922099 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_528471 |
|---|
| Protein GI | 90022644 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.000398528 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAAACTG TTAAACGTAC ACGAAAGTTA TTTACCACCG TTGCTATTTC AATGCTCGCG
CTAGCATTAC CGTTGCAGGC TTTCGCGCAA GATGAACAGC CAGCGCAAAG TTTCGACGGG
CTAGTGGAAA GAATTCACAA CCTTAGCGAA ACTCACGATG CACCTGCATT CGCGCTTGCA
GTTATTGAAG GCGGTAAATT AAGCGGTACG CACGTAGAAG GTAAAGCAGA TAGGGATGCG
AATATAGACG CAACAGCGAA TACATTATTC CGCATAGGGT CTATTTCTAA AATGTTTGTC
GGCCTGGCTG CGCTTAAGCT AGAGCAAGAA GGCCTGTTAG ATATGAACGC CGAGGTGCGC
TCGTTGGCCC CTGAAATCCC CTTCGAAAAC CAGTGGGAGG CAACCGACCC TGTACGCTTT
ATTCATTTGT TAGAGCATAC CACCGGCTGG GATGATATGC ATATGCGCGC ATACAGCTAT
GAGGCGCGGG ATAATCTTAC ATTGGAAGAA GGGCTAAATT TATTTCCAGA GTCCCGTGTA
ACGCGCTGGG TACCGGGCAC ACGAGAAGCC TATTGCAACT CCGGCCCTGC TGTTGCTGCA
TTTATTATTC AGAAAATTAC CGGTGTACCT TTCGAAGAAT ATGTACAGCA ACATTTCTTT
ACGCCTATAG GTATGCCAAC AACAACTTTC TTTAAGCCTC AGCCATACGA TAACGCCGCC
AAGGTGTATC ATTCTGGCAA GCATCAGCCT TATTGGTCGC TTACTGTGCG TCCGTCGGGG
GCTGTTAACT CATCGCTAAC TGAAATGACT CACTTCCTTT CATTCTTAAT GAACAAAGGC
CGTGTGGATA ACCACCAAAT ACTACCCGCA CACCTATTCG ATAAAATGGA AATGCCGCAT
TCTACATTGG GCGCACGGCA GGGTATTGAA GCGGGTTATG GCATAACAAA TATGCTCGAT
GGCTACCAAG GCGCAACGAT GAATGGCCAC GGCGGCGCTG TAGCGGGAGG CATGGCATTT
GTAGGGTATT TTCGTGAACT AGACGCAGGC TTCGTGCTGC TAATGACAGG CGATGGCCTT
GCCTTTCACC ATTCTTTAGA GCAAATTAAA AAATACCTTA CTCGCGAGCT AACCTTCCCT
ACCGATTGGA GTGAAGCGGC GAAAGCATAC CCGCTGCCAG ATAAGTTTAA AGCATTAGAT
GGCTGGTATA GGCCGATTAA TTCTCGAACT AAACGTATGG ACTTAATGCT GCATTTATTA
GGTGCACAAA AAATATGGCA CGAGGAAAAT GTAGTACACA GGTCACCGTT GTTGGAAGGC
TGGGTAAGTA ATGAAATTGC TTACGATAAA CACGTACTCA CCGATGCGTG GACAAACTTG
CCAAGCTTAG CGATGACTAA TGACCCAATA GCAGGTGAAA CCGTTCAGGT TGTTGGTAAC
CTTTACCAAA AAACGTCTGC CCTGAATGTA TTTGGCTTGT TAGCGCTAGT AATGTTTACC
GTGTTGTTTT CCGTTATTGG GTTGTTGTAT GCGGTTTGTT GGGTGCCATA CCGCTATGTT
AAAAAGCAGT TTCATAAACC TTCAACAGCG TTGTTAATAT GGCCAACTCT ATCGAGTTTA
AGTTTGGTGC TATTTCTAAT TTTGCCCATA TTTGTGGGGG TGAACTTTGA GTTGCTGGCG
AAGGTTAATG CCATCACACT GGGTATATTA ATGACAAGTG TATTGTTCCC GCTGTTTACG
CTTGTTGCTT GTGTGCGCCA ATATCAATTG CGTAATAGCC CTGCTAGCAA AGTACTGTAT
TGGTTTGTAG GTGGTGTTAT TGCATTGCAT GTTTTTATGA GTATTTATTT GGCTTGCTTT
GATTTTGTAT TTCTTAGAAC CTGGCTAACC TAA
|
|---|
| Protein sequence | MQTVKRTRKL FTTVAISMLA LALPLQAFAQ DEQPAQSFDG LVERIHNLSE THDAPAFALA
VIEGGKLSGT HVEGKADRDA NIDATANTLF RIGSISKMFV GLAALKLEQE GLLDMNAEVR
SLAPEIPFEN QWEATDPVRF IHLLEHTTGW DDMHMRAYSY EARDNLTLEE GLNLFPESRV
TRWVPGTREA YCNSGPAVAA FIIQKITGVP FEEYVQQHFF TPIGMPTTTF FKPQPYDNAA
KVYHSGKHQP YWSLTVRPSG AVNSSLTEMT HFLSFLMNKG RVDNHQILPA HLFDKMEMPH
STLGARQGIE AGYGITNMLD GYQGATMNGH GGAVAGGMAF VGYFRELDAG FVLLMTGDGL
AFHHSLEQIK KYLTRELTFP TDWSEAAKAY PLPDKFKALD GWYRPINSRT KRMDLMLHLL
GAQKIWHEEN VVHRSPLLEG WVSNEIAYDK HVLTDAWTNL PSLAMTNDPI AGETVQVVGN
LYQKTSALNV FGLLALVMFT VLFSVIGLLY AVCWVPYRYV KKQFHKPSTA LLIWPTLSSL
SLVLFLILPI FVGVNFELLA KVNAITLGIL MTSVLFPLFT LVACVRQYQL RNSPASKVLY
WFVGGVIALH VFMSIYLACF DFVFLRTWLT
|
|---|
| |