| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2947 |
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| Symbol | |
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| ID | 3967825 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 3746414 |
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| End bp | 3748138 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637922044 |
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| Product | hypothetical protein |
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| Protein accession | YP_528416 |
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| Protein GI | 90022589 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02474] pectate lyase, PelA/Pel-15E family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.00368039 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.813372 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTTTC TACGCCTTAT TACACTCGCA CTCGCCGCAA CACTATTAAG TGCCTGCGGT
GGAGGTAGTT CTGGCCCAGC CAAAGAGATA AACGCTTCCA CCAGTTCCTC TAGCTCTAGC
AGCTCCACGA GTTCTAGCAG CTCATCCAGC TCTAGTAGTT CGTCTAGCTC AAGCAGCTCG
TCTTCCAGTT CCAGCAGCTC ATCCTCTAGC TCTAGCAGCT CTTCTGGTGG TAGCGCCGGC
ACACTCACTA TTCAGGAAAG CGAAAAAGGC TTTTGCACTG TTAACGGTGA GATTGTGAAT
AATCACGAGG GGTATAGCGG TACAGGTTTT GTAGACACCG CCAATGCCGA AGGCGCCAGC
ATTACTTGGA AGGTAGATGT CGATGGCGGC AATTATGATG TAAGTGTGCG ATTCGCAAAC
GGTTCCACTG CACGCGGCGC AACGCTTAGC AGTAACGAAA TAAATACCAC CTATGGTTTT
GCTACCACTG GCGACTGGGC CACATGGGCA GACGAAACCC ACACCGTTTC GTTAGCCGCA
GGCGAAAACA CCATCCAGCT AAGTGCACTT ACCGCGGGTG GCTTACCCAA TGTAGACGCT
ATTACTATTG CAGGTGCAGG TGTACTCGCA GCAGACTGCG CCACAGAGCA TACTGGGCCA
ATGCTTTCGC AAACAGGCAA CCCTATTTAT ACCGAGTTAA ATAATTACAA GTCCTGGCTA
ACGGGTAGCG GCACAACAGC AGCCAAATTA GCCGCAGATA AAACAATTGC CGACAATATG
ATTACCTGGC AAATGCCTCA CGGTGGTTTT TATAAATACG GCGTATCTAA ATACAGCTCG
GCTTGGAACG GTAGCGATGC CCGCTCTGGC TGGACTGGGG CCAACGGCGT TGAGCTTGGC
ACAATTGATA ATGATGCAAC CGTTAGCGAA TTATTATTTT TAGCGGACGT ATATAAACGC
AGCGGTGAAA CTAAATATAG AGATGCCGCA AGAAGCGCGT TGGAATTTTT ACTTACCATG
CAATATTCCA CTGGCGGTTG GCCACAGGTT TACCCTGCGC GCACTGGCAC CAGTTACTCC
AATCACGTTA CGTTTAACGA TAACGCCATG GCTCGTGTAC TTATTTTATT GGATAAAGCC
GCGCGATTAG AAGCACCACT CGATGGCGAC ATTTTTACCA CAGACCAGCA CACGCGTATT
ACTACCGCAA TAAATGGCGG CATCGATTTT ATTTTGAATG CGCAAATAGT ACAGGGCGAC
GTGAAAACCG TTTGGTGTGC GCAACACGAC CCTTATACCT ACGAGGCAAA AGCAGCTCGC
TCTTATGAGT TGGCCTCTAA AAGCGGTAAA GAATCTGTAT TGGTTGTAGC GTTTTTAATG
ACACGCCCGC AAAGCGAAGC CATAGAAAAT GCCGTGAAAG CAGCCCTTGC TTGGTACCGC
AACCCAAATG TTCAAGTCGC CAACACCGAG TATGTAAAAC GCACAAATAA CGATGACAAC
TACAACCCGA TACAAACGAA AGCAGGTAGC ACTATGTGGT ACCGCTTTTA CGATTTAGAC
CAAGACGTTG GATTCTTTAG CGGCCGCTCT GCAAGTGACA ACCCAGCAGG TAACGGTAAG
CAATACGACA TTATGCTTAT TGAACCCGAG CGCAGGTATG GCTATGAATG GGGTGGCAAT
TACGGCAAAA AAATAATCGA TTACGCTAAT TCGGTAGGGT ATTAA
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| Protein sequence | MNFLRLITLA LAATLLSACG GGSSGPAKEI NASTSSSSSS SSTSSSSSSS SSSSSSSSSS
SSSSSSSSSS SSSSSGGSAG TLTIQESEKG FCTVNGEIVN NHEGYSGTGF VDTANAEGAS
ITWKVDVDGG NYDVSVRFAN GSTARGATLS SNEINTTYGF ATTGDWATWA DETHTVSLAA
GENTIQLSAL TAGGLPNVDA ITIAGAGVLA ADCATEHTGP MLSQTGNPIY TELNNYKSWL
TGSGTTAAKL AADKTIADNM ITWQMPHGGF YKYGVSKYSS AWNGSDARSG WTGANGVELG
TIDNDATVSE LLFLADVYKR SGETKYRDAA RSALEFLLTM QYSTGGWPQV YPARTGTSYS
NHVTFNDNAM ARVLILLDKA ARLEAPLDGD IFTTDQHTRI TTAINGGIDF ILNAQIVQGD
VKTVWCAQHD PYTYEAKAAR SYELASKSGK ESVLVVAFLM TRPQSEAIEN AVKAALAWYR
NPNVQVANTE YVKRTNNDDN YNPIQTKAGS TMWYRFYDLD QDVGFFSGRS ASDNPAGNGK
QYDIMLIEPE RRYGYEWGGN YGKKIIDYAN SVGY
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