Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_2834 |
Symbol | |
ID | 3968178 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 3578665 |
End bp | 3582381 |
Gene Length | 3717 bp |
Protein Length | 1238 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637921931 |
Product | glycosyl hydrolase-like |
Protein accession | YP_528303 |
Protein GI | 90022476 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG5498] Predicted glycosyl hydrolase |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00529602 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0523238 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATACTGC GACTGATACG TGCCGCAATT TACATTGTGG CGTTTGTTTC TCTTATCGCC TGTGGGGGCT CAAGCACATC CAAGCCCGCG CAACCGGATA TTCCCGATAC GGATCTGCCT GACACGGGAA CACCCGAACC CGAAAACAGC GATCCAGTTG TTCAATCTAC GCCGGCTACA GCCATTGCGG CGGGCAACGT GTATAGCTAT CAAATAATGG CTAGCGACGC AGACGAATCG GATGTCATTA GCTATGCGGC GGTTACTTTG CCTAGCTGGC TGGCGTTCGA CCCAGATACC GGAATACTTA CCGGCACGCC CCAGCAAGCT CATGCTGGTA ATGCTGAAGT GGTGCTTAGC TATAGTGACG GCAACGTAAC CCTGCAGCAG CAATTTACAA TTGCAGTTAG CGCGAGCTAC ACCGAAGAGC CACCAACACC GATGAGTCGC CCAACCGTAA ATGCGGCGGA TACCAGTACT TACACTATTA CTGCCTACGG CGCGGGCAGT ATTGCGGATG CGATTAACCC TGCTAGCTAT GGCTGTGTGT ACGATTACGG TAATTGGATT TATAACGCCG GCGTTGTGGA GCCAGGAGTA AGCGGCTGTG ACCCTATAGG CGCACCAACC TACCGTACAC CGCAGGTGGT TGGGGAAGCG GCAAGCGTGC CAACCCCAAC GCATAAATGG TGGGGCTCGG TTTCTTTTTT AGGTGAAATG AAAATAGGTG ACCCGGCAGG CGCAGGTTAC ATAACGCCAG ACCCAATAAC TGCACGTATC TCGAATAAAG GCGTGCGTAT TATGGGCATA CCCAACGGCT TGGGCGCGCA AGGCAACCAG TTTATTTACT CTGTACCCGA CCCTTTTAGC GAGGTATTCG ATGGAATAGC GGTAGCGAAT AGCGAATATG CCAACCTAGA AGCGTATTTA AAATCCTACA GCGATGGCAC CGCTACCGTG CAATGGCAGA GTGGCAACCT GCCGGTTATG CAGGCCACAT TTGTACACGG CTCCCCCTAT GTGTTTTTTA AAGCCTATCG CGGCAACATG GTGTTGCGCA CCAAAGCTGC AGACGGCGGT GAAAAAGGCA CGTTTTATAA TGAAAATAAT AGTTTAGGTA TTTGGACCAG TGTAGCGGGT AACAAAAATG ACTTTTTAAT TACCGGTGAA GGCGAAACGG TTTTTAACAA TATCGAAACC GATACCATTA CGTTAACCAA TGCAGCGAAC GAATTTACCT TAACGTTATT ACCTACAGCG GGCGCCGGTA CACCTTCAAG TACTGTTATT CAGGCGTTTG AAGATAGCGC CCGTGCAGTG GTTGCCAAAG TAGATATTCA ATACTCGGTA GACCGTACCA ATAACATGGT AACGGTTACT CATACCTATA AAAATGAAAG CAATACGCCA GTGCAAACCC TCGCGGGGTT ACTGCCCATG CATTGGAAGT ATTCCGATAC AGCATTAAGC GGCTACAAAA CCCGAAGTGC GCGCGGGATG GTGCAATTTG CCCATATTGA TTCGTTTAGC TACACCATTC CTTATGTGGG AGTATTACCG TATTTACCGT CATCGGTAGG GGATTTCGAT TCCTCTGTGC TCGCAGGCTT AGTGCAGGCG TTTGTAGCTG AAGGGCCAGA AAATTGGAAC CCGCACACCG ATACCTATTG GTCGGGCAAA GCGTTTAATA AAGTTGCCGA GTTATCGGCA ATAGCGCGCT CGGTAGGTAT GACAAGCGAA GCAGATACGC TGTTAAATTG GCTTAAAGCC GAACTGCAAG ATTGGTTTAG CGCCAACACC AACGGCAGTT TGGATGAGAA AAAATACTTT GTGTACGATG CCGAGTGGAA TACCTTGCTT GGCCTAGAAG AATCTTTTGC TGCACACCAA CAACTAAACG ATCACCACTT TCACTACGGC TATTTTGTAC GCGCCGCTGC AGAAATATGC CGAGTAGATG CAAGCTGGTG TGGCGCAGAC CAGTATGGTC CCATGGTGGA ACTGCTTATT CGCGATTACG CCGGTGCCAA AGACGATACT ATGTTCCCTT ACGTGCGTAA CTTCGACCCC GCCAATGGCT TTTCTTGGGC ATCGGGTAGT GCCAACTTTG TGCTGGGTAA CAACAACGAA TCCACATCCG AAGCGGCCAA TGCCTATGGT GCAATTATTC TGTACGGGTT AATAACTGGC GATAATGAGT TAGTGGAGCG CGGTATGTAT TTGCACGCGT CTTCGTCGGT GGCCTACTGG GAATATTGGA ACAACATCGA CCGCTACTTG GGGGCCGATG CCGACCGCGA TAATTTTCCA TCGGGTTACG ACAAACTAAC TACCTCTATT ATTTGGGGGC ATGGCGGCGT GTTCTCTACC TGGTTCAGTG GCGCTTACGC TCATATTCTT GGTATTCAAG GGCTGCCTAC CAACCCGCTT ATTTTTCATG TGGGCTTACA CCCCGAGTAT ATGGAAGACT ATGTGGCACT GGGTTTAAGT GAATCGAGCA ACAATAAACC TTCGGGGTTA ATCGACGATC AGTGGCGCGA TATTTGGTGG AACCTATGGG CCTTGACTGA TGCAGAAGCG GCCATCGCCG ATTACAACAC GGTAGGCAGT AACTATGCGC CAGAGTTTGG TGAAACCAAG GCGCACACCT ACCACTGGTT GCACACGTGG AATGCGCTCG GCCATTTAAA AACCGGCACT GGCGAGCTAA CGGTAAACGA CCCCGCTGCA TTAGTGTTTG AAAAGGACGG AATAAAAACC TACGTAGCGT ATAACTTTAG CGGTACACCA AAAACTATTT TGGCTAGCGA TGGCTTTGAG TTTATTGCGC AGCCCAATGA TTTTACCGTG GTGACCACCG CCGATAACAA CCCCGACGAC ACGCAACCGC CTACACTACC GGCAAACTTG CAAGCGCTTA ACCTTACCCA AACGAGCTTG GATGTTAAAT GGGATGCATC TACCGATAAC TACCGTATGG CAGGTTATGT AGTGCAGGTA TTACAAGCCG ATACATTAAT AGAAGAAACG TCTTCTATAG CCAGCATCGC CTCGTTTAAT AACTTAACGG CCAGCACAAG TTACACCATT CAAGTTAAAG CTAAGGATCG CTCTGGCAAT GAAACCGCAT GGGTAAGCAT TACGGTAACC ACGCCCAGCG AAACCGACGA TTTACTACCA ACACTTGATG GCGGTGTATA TAGCGCAAAC GTGGGGCCTA ACTCTGCGGA TTTAAGCTGG GCGGCAGCAA CAGATGATCG CGGTATAGCA AGTTACACCA TAGAGGTGCA GGTTGGCGGC GCAGTATTTG TAACTGAAAC AGTGTTTGAT ACTTCGTATG CGCTTAGCGG ATTGACCGAA GCAACCGAAT ACAATGTGGC GGTTTATGCT ACAGATACCG GCGGTCAACA ATCTGCCACT ATTAGCGGTA TTGTTAATAC CACCAGCAAT CCATTTGGCA GCGGTTGCGA ATTGATTTGT GCCAGCGCTA CCTCTAGCTC ATCTGTTACG TTTACTGTGC ATCAAGCGGG CGCGGTAGAT ATTCACTACT TAGTGAACGG TGGTAACCAG CAAAATGTAA GGATGTCTGC TCAGGCAGAC ACAAGTGTTT ACGAGGTAAC TGGGCTAAGC GCGGGGGATG TGGTGCGAGT TTCGTTTACC GTTATTCCAT TAGATGGCGG CGCGTACGAT ACCGATTGGG AAAACTACAC TTTTTAA
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Protein sequence | MILRLIRAAI YIVAFVSLIA CGGSSTSKPA QPDIPDTDLP DTGTPEPENS DPVVQSTPAT AIAAGNVYSY QIMASDADES DVISYAAVTL PSWLAFDPDT GILTGTPQQA HAGNAEVVLS YSDGNVTLQQ QFTIAVSASY TEEPPTPMSR PTVNAADTST YTITAYGAGS IADAINPASY GCVYDYGNWI YNAGVVEPGV SGCDPIGAPT YRTPQVVGEA ASVPTPTHKW WGSVSFLGEM KIGDPAGAGY ITPDPITARI SNKGVRIMGI PNGLGAQGNQ FIYSVPDPFS EVFDGIAVAN SEYANLEAYL KSYSDGTATV QWQSGNLPVM QATFVHGSPY VFFKAYRGNM VLRTKAADGG EKGTFYNENN SLGIWTSVAG NKNDFLITGE GETVFNNIET DTITLTNAAN EFTLTLLPTA GAGTPSSTVI QAFEDSARAV VAKVDIQYSV DRTNNMVTVT HTYKNESNTP VQTLAGLLPM HWKYSDTALS GYKTRSARGM VQFAHIDSFS YTIPYVGVLP YLPSSVGDFD SSVLAGLVQA FVAEGPENWN PHTDTYWSGK AFNKVAELSA IARSVGMTSE ADTLLNWLKA ELQDWFSANT NGSLDEKKYF VYDAEWNTLL GLEESFAAHQ QLNDHHFHYG YFVRAAAEIC RVDASWCGAD QYGPMVELLI RDYAGAKDDT MFPYVRNFDP ANGFSWASGS ANFVLGNNNE STSEAANAYG AIILYGLITG DNELVERGMY LHASSSVAYW EYWNNIDRYL GADADRDNFP SGYDKLTTSI IWGHGGVFST WFSGAYAHIL GIQGLPTNPL IFHVGLHPEY MEDYVALGLS ESSNNKPSGL IDDQWRDIWW NLWALTDAEA AIADYNTVGS NYAPEFGETK AHTYHWLHTW NALGHLKTGT GELTVNDPAA LVFEKDGIKT YVAYNFSGTP KTILASDGFE FIAQPNDFTV VTTADNNPDD TQPPTLPANL QALNLTQTSL DVKWDASTDN YRMAGYVVQV LQADTLIEET SSIASIASFN NLTASTSYTI QVKAKDRSGN ETAWVSITVT TPSETDDLLP TLDGGVYSAN VGPNSADLSW AAATDDRGIA SYTIEVQVGG AVFVTETVFD TSYALSGLTE ATEYNVAVYA TDTGGQQSAT ISGIVNTTSN PFGSGCELIC ASATSSSSVT FTVHQAGAVD IHYLVNGGNQ QNVRMSAQAD TSVYEVTGLS AGDVVRVSFT VIPLDGGAYD TDWENYTF
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