| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2692 |
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| Symbol | |
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| ID | 3968472 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 3416329 |
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| End bp | 3418869 |
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| Gene Length | 2541 bp |
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| Protein Length | 846 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637921790 |
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| Product | penicillin-binding protein |
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| Protein accession | YP_528164 |
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| Protein GI | 90022337 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000762848 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0050562 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAATAA AATCCAAATT TTTAGCCGTT ACCCTATGGT TCATCGCCGC TGGCATAGGT
TGTAGTTTAG TCGGATTATC CGGAACATAC CTTTACCTTA GCCCACAATT ACCATCGGTG
GATACATTAC GTGACGTACG CCTCCAAACC CCGCTTAGAA TCTACTCTGC TGATGGAAAA
TTAATCGGCG AATTTGGCGA CCAACGCCGC ACCCCCGTTA AGTTTGACGA CATTCCGCCA
CTTTACATTC AAGCCCTGCT CGCGGCTGAA GACGCTCAAT TTTTCACCCA TCACGGCGTA
TCAATTAAAG GGATTAGTCG CGCAGTGGTA GAGCTTGTTA CCACGGGTAA AAAAGGCTCT
GGGGGCAGCA CCTTAACCAT GCAGGTTGCC CGAAATTACT TCCTCACCAA ACGAAAAGCT
TTTATACGTA AGTTCAACGA GATTCTTCTA GCCCTAAGAA TTGAGAAAGA GCTCACAAAA
GAAGAAATTT TTGAACTTTA TGTCAATGTT ACCTTTTTAG GGAAGCGTGC CTACGGCATT
GAAGCTGCCG CACAAGTCTA TTACGGCAGA ACACTTAACG ACTTAACCTT ACCCGAATTA
GCAATGATAG CAGGCCTTCC TCAGGGCCCC TCCTTCCAAA ACCCTATTAT TAACCCAGAG
CGCGCCAAGG AGAGACGCAA TTGGATTCTA GGACGCATGT TTGAACTTGG CTCTATCAAC
GAGGAAACCT ACGCTCAAGC CGTTGCCACC CCCGTCACAG CCAAATACCA CGGTGTAAAT
TTAGACGTAT ACTCGCCTTA TGTTTCAGAA ATGGCACGAA AGAAAGCAAT CGAGCTATTT
GGCTATGCCG CATATACGGA TGGCTACCGA ATATACACAA CCGTCGACAG TCGATTACAA
GACACTGCTC AGCAAGCCGT TGTAGAAGGG CTGATCACTT ACGACCAACG TCACGGCTAC
CGAGGCCCCG AGCAAAACCT TCCGCTCGAC CAACTCGACA TTAAAACAGA TGAGAGCGGG
CTATCAACGA CCGACTACGG CCCCTGGCTT GAAACACTCA AAGCCACCCC CTCTTACGGC
AACCTCAAGC CGGCACTAGT GACCGGCGTA GAAGATCAAC GTATTCACGT ACTTACCGAG
GAAAACGAAA TACTCACCCT CGAGTGGGAT CAAGGCTTAT CCAGCGCGCG CCCTTATATA
ACCGAAGACT CGCGCGGCCC TTCCCCAAAA CTAGCCGAAG AAATTGTCGC ACCGGGCGAC
CTGATTCGCA TCAAGCAGCA AGATGGCATG TGGAGACTGA GCCAAATTCC AGAGGCTCAA
GCTGCACTTA TCTCTCTATC GCCGCAAAAT GGCGCTATTA GAGCGCTCGT CGGCGGCTTT
GACTTTCACC AGAGCAACTT CAACCGTGTA ACACAAGCCC GCAGACAGCC AGGCTCTAAC
TTCAAACCAT TTGTATATAC CGCCGCGCTA GAGCACGGCA TGACCGCCGC CTCCATCATT
AACGACGCCC CAATCGTATT CGAAGATGGG CAACTCGAAA GCACATGGCG ACCAGAAAAC
GACGGCGGAC GCTTTTACGG GCCTACTCGC CTAAGGGAGG CGCTGTACCG ATCCAGAAAC
TTGGTTTCGA TCCGAATCTT ACGCAACACA GGTATCTCCA ATGTGATTGA CGGCATGTCG
CGTTTTGGTT TTGACGAATC TGAACTTCCC CGCGACCTAT CTCTAGCGTT AGGCAGCCAC
GATTTAACCC CTTTGCAAGT GGCAACCGGT TACGCGGTAT TCGCCAACGG GGGCTATAAG
GTTGAGCCTT ATTTAGTGGA AAAAATTCTA AACTTCGATG GTCGCGCCGT GTTCGAAGCC
TTACCGCCAA CAGTATGTAA CGGCTGTGAC GATGGCGAAT ATCTCGCGCA ACTTAGCAGC
CAAAACGATT CGGGCGCCGA AGAGGATAGC TCTAACAACC CCTACCAAAT TCAGGGCGAC
CCCTTCCAGT TCGACTTTGA GGTTAAGAGC CTGCTAGGTA TTTTAGAGCC TAGCGATTAC
CCCAAAGCAC CAAAGGTGCT CGACGACCAA GTCGCTTACA TCATGGACTC AATCCTAAAA
GATGTTGTTC AAAAAGGTAC TGGCTACCGC GCAAAAGCCC TAGGTAGAAC TGATTTGGCA
GGGAAAACCG GCACCACCAA CGGCCCCAAA GACGCTTGGT TTTCCGGCTA CAACGGTAAT
CTTGTGGCCA CTACTTGGGT TGGGTTTGAT CAGCATTCGC CACTTGGTAA AAATGAATAC
GGCGGCTCTG CAGCATTGCC AATTTGGATA GACTTTATGA AGGAGGCGTT AAAAGGCAAG
CCGAATACAC ATCGCGCCCA ACCTCCAGGC ATGGTTACCG TACGCATAAA CCCAGAAACG
GGCGAACGCG CTAGGATTGA CGACCCAGAC GCGATATTCG AAACATTTAG AGCGGAGCAT
GTGCCACAGT TTAAATCACA GAACGACGCC ACCAATCAGG CCATGCCGTA CGAAGAGAGT
ATTACAGAAG ACCTTTTCTA G
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| Protein sequence | MKIKSKFLAV TLWFIAAGIG CSLVGLSGTY LYLSPQLPSV DTLRDVRLQT PLRIYSADGK
LIGEFGDQRR TPVKFDDIPP LYIQALLAAE DAQFFTHHGV SIKGISRAVV ELVTTGKKGS
GGSTLTMQVA RNYFLTKRKA FIRKFNEILL ALRIEKELTK EEIFELYVNV TFLGKRAYGI
EAAAQVYYGR TLNDLTLPEL AMIAGLPQGP SFQNPIINPE RAKERRNWIL GRMFELGSIN
EETYAQAVAT PVTAKYHGVN LDVYSPYVSE MARKKAIELF GYAAYTDGYR IYTTVDSRLQ
DTAQQAVVEG LITYDQRHGY RGPEQNLPLD QLDIKTDESG LSTTDYGPWL ETLKATPSYG
NLKPALVTGV EDQRIHVLTE ENEILTLEWD QGLSSARPYI TEDSRGPSPK LAEEIVAPGD
LIRIKQQDGM WRLSQIPEAQ AALISLSPQN GAIRALVGGF DFHQSNFNRV TQARRQPGSN
FKPFVYTAAL EHGMTAASII NDAPIVFEDG QLESTWRPEN DGGRFYGPTR LREALYRSRN
LVSIRILRNT GISNVIDGMS RFGFDESELP RDLSLALGSH DLTPLQVATG YAVFANGGYK
VEPYLVEKIL NFDGRAVFEA LPPTVCNGCD DGEYLAQLSS QNDSGAEEDS SNNPYQIQGD
PFQFDFEVKS LLGILEPSDY PKAPKVLDDQ VAYIMDSILK DVVQKGTGYR AKALGRTDLA
GKTGTTNGPK DAWFSGYNGN LVATTWVGFD QHSPLGKNEY GGSAALPIWI DFMKEALKGK
PNTHRAQPPG MVTVRINPET GERARIDDPD AIFETFRAEH VPQFKSQNDA TNQAMPYEES
ITEDLF
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