Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_2664 |
Symbol | |
ID | 3968483 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 3379620 |
End bp | 3380495 |
Gene Length | 876 bp |
Protein Length | 291 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637921762 |
Product | protease subunit HflC |
Protein accession | YP_528136 |
Protein GI | 90022309 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0330] Membrane protease subunits, stomatin/prohibitin homologs |
TIGRFAM ID | [TIGR01932] HflC protein |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATGCTA AAACATTGTT TATATTGGCC ACCTTAGCAA TTGTCGCAAT TGTTGCGTCT AAATCGCTGT ATGTGGTGAA CGAAACTCAG CGCGCGGTAC TGTTAAAGTT TGGTGAGGTG GTTGAGTCAG ATTTACAGCC GGGCTTACAC GCTAAAGTGC CCTTGATGCA CCAAGTTAAG ATTTTTGATG CGCGAGTACT TACGTTGGAT TCTCGTGCGG CTAAGTTTCT TACCGTAGAG AAGAAAGCAG TAGAGGTGGA TTCATTTGCC AAGTGGAGAA TTGTAGATGT AAGCCGATTC TATACCTCTA CCAACGGTGA CGAGATACGT GCACAGCGCT TACTCGAGCA GCGTATTAAC GAAGGTTTAC GGAACGAGTT CGCGCAGCGT TCACTGCAAG AAGTGGTGAG TGGCGAGCGT GCAGTGTTGA TGACCAACTT AACCGAACAG CTTAACGGCT TCACCAAAGA ATCTTTAGGT GTAGAAGTTG TCGATGTTCG CGTGAAGAAA ATCGACCTGC CGAATACGGT GAGTGGGCCT ATCTTTAGTC GTATGGCTGC TGAGCGTCAG CGTGAAGCGC AAGAGCACAG AGCGAAAGGT GGTGAGCAAG CTGCCATCAT TCGGGCGGAT GCCGAGCGTC AAAAAACTAT CCTCGAAGCG CAGGCGTATA AAGAGTCTGA ATTACTGCGC GGTGAGGGCG ATGCGAAAGC GGCTGCTATT TATGCATCTG CTTACGACAA AGACCCAGAG TTCTATGCGT TTGTTCGCAG CCTTACAGCT TACCGCAGCA CCTTTAGCGG CAAGCAAGAT GTATTGGTGT TATCACCTGA AAGTGAGTTC TTTGAGTACT TCAACAGTAC AAATAAGAAA AAGTAA
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Protein sequence | MNAKTLFILA TLAIVAIVAS KSLYVVNETQ RAVLLKFGEV VESDLQPGLH AKVPLMHQVK IFDARVLTLD SRAAKFLTVE KKAVEVDSFA KWRIVDVSRF YTSTNGDEIR AQRLLEQRIN EGLRNEFAQR SLQEVVSGER AVLMTNLTEQ LNGFTKESLG VEVVDVRVKK IDLPNTVSGP IFSRMAAERQ REAQEHRAKG GEQAAIIRAD AERQKTILEA QAYKESELLR GEGDAKAAAI YASAYDKDPE FYAFVRSLTA YRSTFSGKQD VLVLSPESEF FEYFNSTNKK K
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