| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2442 |
|---|
| Symbol | |
|---|
| ID | 3965389 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 3087378 |
|---|
| End bp | 3088073 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637921533 |
|---|
| Product | putative short-chain dehydrogenase |
|---|
| Protein accession | YP_527914 |
|---|
| Protein GI | 90022087 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.198493 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAAAC ACATGATGAT AACCGGCGCC ACCTCGGGCA TAGGGCGAGA AATTGCCATA
ATGGCGGCAG ACCAAGGCTA TAACCTTAGC CTTTGCGGAC GCGATAAAGT ACGCCTAGAA
CAAACTTGGG AACTGTTGCC AGAAAAAACC AAAACGCACA ATCACATCTT TTGCGCCAGC
GAAACCGCAG CCATTCAACT GTTTGCCAAA GAAGCGCAAG AAGAATTAGG CGCGGTGGAC
GTACTGGTAA ACTGCGCAGG CCTAAACAAT GTACGCGCGC TAGGCCATGA AGTATCAATA
GATGACTTAC ATTGGTTAAT GAAAATTAAC TGCTACGCCC CTATTGCTTT TATGCAAGCG
GTCATCCCAA ATATGAAGGC GAATAAAAAC GGCGCTATCG TAAATATACT TTCTACCGTC
TGTCAGTTCT CCAATCCTGG TATCGCAGCC TATACTGCAT CCAAAGCGGC ATTAGACAGC
TACACGAAAG TGATGAGAAA AGAGTTACGC GAAGACAAAA TTAAGATGCT ATCACTTTAC
CCTGGTGGCG TAGACACAGC TTTTCGCGCA ACCGACCGAC CAGAATACCT AACGCCGCAA
AGCGTCGCCA AAGCTGCAAT GCAAATGCTA GATTACGACG AAGACACTCA CATTCACGAC
TTAATTATTC GCCCTACTAG CGAACAGAAC TTCTAA
|
|---|
| Protein sequence | MAKHMMITGA TSGIGREIAI MAADQGYNLS LCGRDKVRLE QTWELLPEKT KTHNHIFCAS
ETAAIQLFAK EAQEELGAVD VLVNCAGLNN VRALGHEVSI DDLHWLMKIN CYAPIAFMQA
VIPNMKANKN GAIVNILSTV CQFSNPGIAA YTASKAALDS YTKVMRKELR EDKIKMLSLY
PGGVDTAFRA TDRPEYLTPQ SVAKAAMQML DYDEDTHIHD LIIRPTSEQN F
|
|---|
| |