| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2389 |
|---|
| Symbol | |
|---|
| ID | 3967909 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 3028307 |
|---|
| End bp | 3029335 |
|---|
| Gene Length | 1029 bp |
|---|
| Protein Length | 342 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637921480 |
|---|
| Product | cytochrome c oxidase cbb3-type, subunit I |
|---|
| Protein accession | YP_527861 |
|---|
| Protein GI | 90022034 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3712] Fe2+-dicitrate sensor, membrane component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.12376 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0000606712 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAAA TATACAAACT CGCCCCAGCG GACGAAATAA ACGACCAAGC CTGCCTTTGG
ATAGCTCGCC TAGATAGAGG CTTAAGCACG GATGAGCAGC AAGCTCTTAA AAAATGGGTT
AACGAATCTC ACGCTCACGC GAGTGCCCTT TATCGCGCCG CAGAGCTATG GGATAAAATG
GATGACCTTT CTCGCTTGGC AGACCTGTTT GAAGCGCCAA AAGAAACGCG CTTCCCCTAC
GGCATAGCGG CATCGTTAAT TGCTGGCTTG GTCGCCTTAG GCTTATTTTT TAGTACCGCT
CCATTTACCA CCCCACAAAC GGATACACTC ATAGCCAACC ACCAAGCAAG TGCCATATAC
GAAACGGCAA TTGGTGAGCA ATCGGTTGTT ACGCTTTCAG ATAGCAGCGA GCTAACCCTC
AACACCAATA CCAAGGTTGC GGTCAATTAC ACTGAACAAG CCCGCATACT TACCTTGCTG
CGCGGTGAAT TACACATTAA AGTTGCTCAC AATAAAAGCC GCCCCCTCAG CGTTGTAGCC
CAGGATAAAC TCGTTCAGGC AGTAGGCACG GCTTTTAATG TGCAAATAAT GGATACGCAA
GAAGTTGAAT TGATCGTTAC CGACGGCAAA GTACTTATTG CTGAGAACGT GAAAGACATC
TCGGTTGCGC AAAAGCCCCT CTCAACGCAA AACGCGTCAA TAGCTAAAGG GCAAAAAGTT
ATACTGGGTG CGCCCAATGC CAATGTAACT GCCCTTGATG AAAATGAGAT TTCTGCAAAG
CTTTCTTGGC AGCATGGCAA TATAATATTT AAAGGCGAAA CCCTTGCACA GGCGCTAATA
GAAATAGAGC GCTACACCTC AACACGATTC GAAATAGAAG ATAAAAGCAT TGCTAACATT
CGCATTGCAG GCATGTTTAA AGCTGGCGAT ATAGATGGGC TAACACTTGC TTTAAAACAA
AATTTTAATA TAGATGCAGC TGGCACCAAT GGAGAAAAAA TTATTCTTAC GCGCGGCGCA
ACATTATAA
|
|---|
| Protein sequence | MSKIYKLAPA DEINDQACLW IARLDRGLST DEQQALKKWV NESHAHASAL YRAAELWDKM
DDLSRLADLF EAPKETRFPY GIAASLIAGL VALGLFFSTA PFTTPQTDTL IANHQASAIY
ETAIGEQSVV TLSDSSELTL NTNTKVAVNY TEQARILTLL RGELHIKVAH NKSRPLSVVA
QDKLVQAVGT AFNVQIMDTQ EVELIVTDGK VLIAENVKDI SVAQKPLSTQ NASIAKGQKV
ILGAPNANVT ALDENEISAK LSWQHGNIIF KGETLAQALI EIERYTSTRF EIEDKSIANI
RIAGMFKAGD IDGLTLALKQ NFNIDAAGTN GEKIILTRGA TL
|
|---|
| |