| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2240 |
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| Symbol | |
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| ID | 3964844 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 2845997 |
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| End bp | 2848825 |
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| Gene Length | 2829 bp |
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| Protein Length | 942 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637921331 |
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| Product | sensor/response regulator hybrid |
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| Protein accession | YP_527712 |
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| Protein GI | 90021885 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00499034 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAATCTC AATCAGTTCA AACGGAATTG TTTCGTCTCA TTACAGTACC TGTGTTTGCG
GCCTGCTTTA TTTTGGCGTC CACTTTTTTC TATCTACAAA AAAGTCACAT AGAAGACCAA
TTTAGCAACA ACAAACACCT AGCTACCGAG CTACTAAACA GCGTTGTATT CTCCAATAAA
GCGAGCACAA ACCCCTTCGC CGAAGCGGCC AATGCTTTGC TCGCCACAGG CGATTATCGT
TCGATTGTTG TAAGCAGTGC TACAGGGCAA CAAATCGCAA GCTACGGCCT GCCTTTACGT
ACACACAGCT ATCAAACCCA ACTAGGCGTA GAATCGCAGT GGACTCACGA AGATTCTCTT
ATCTATTCAT TTCCACTCAA AAAATCTAAC TTACAAAGTA GCACCCCACT CTGGGTGATA
ATTGCTATAG ATAAACGCAG CTGGGCTATT AGCGAGTATC AAGGCACTAT TACAATATTA
CTTGCTGGCT CACTGTGTTT GTTTCTAACA TTCTACTTTG CGCGACGCTT CCGCGATGCC
CTTGCCACAC CCTTGCAAAA AATTGAAACT GGCTTAAGAG ATTTTCTTAA GGGTAATTTC
GAAAAAAGCA TTACTATCGA GCCCTCCTCA GTATTTAAAG ACCTAGCCTC TAATATTAAC
CGTCTTGGCG CACTGCAAAA ATCCGCCAAT GACGAACTTC AACTTAATAT AGATCAATCC
ACACATGAAC TGCGTGAAAC ACTAGAAACG GTAGAAATAC AAAATATAGA ATTGGATATA
GCGCGCAAAT CTGCCCTGCA AGCCAGCCGA GTTAAAAGTG AGTTTTTGGC AAACACCAGC
CACGAAATAC GCACCCCCCT AAACGGGATA TTGGGCTTTT CCGAACTTCT TCGTAAAACT
GAGCTGAATA ACCAGCAAGT AGACTACCTC ACCACTATAG AAGAGTCTGC TAAAGGCTTG
CTCACCATTA TCAACGATAT TCTAGACTTT TCACGCTTAG AAATAGGTAC GCTTACTCTG
GAATATAAGC CAGTTAAAAT ACGCCAATTA ATTGAAGACA CCCTTAAATT ACAAACCCCC
GCTGCGAATG AAAAAAATAT TCGCATGCTC ACCATTATTG ACCACGATGT ACCCGAAAAC
CTGCTTGGCG ACCCGCTTCG CTTGAAGCAG GTGCTAAGCA ATCTGGTTTC CAACGCCATA
AAATTTACAG ATGTTGGCTA TATTTTACTG GGCGTTAGCA AAGACCAAAG CTCTGAGAAT
CAATTCACTT TAAAGTTTAG AGTTACCGAT AGCGGTATAG GCTTATCTCA AGATCAACAG
GAGCGACTAT TCGACCCGTT TACCCAGTTG GATTCGAGTG AAAGCCGGCT ACACGGCGGT
ACCGGCCTAG GTTTGGCCAT CGCAAAAGGC CTTGTGGACC GAATGAATGG CACTATAGGT
GTAGAAAGCA CCCTAGGAAA AGGGGCCACA TTTTGGTTTA CAAGCACCCT AGGTAGAAGC
CCGAGCGCGA GTGCAAAACA AACCTATTTA GCGGGCACTT TGCGCGGCGT GCACGCGCTA
GTATTCGATC ACAGTAATAT GGGGCGAATG GAAATTACCC ACTACCTAAC CGGTTGGGGG
GCAAAAGTTT GCGAGACTGG CGAGATGGAG GACATTGAAC CTCAAATAAG CTTCTTTAGT
AATAGCGAGC CAGTAGATAT AGCAATTATC GATAGCATGA TTGATATCAA AACATTCGAT
CGTCTGCGTA TTTGCGAACA CGTGACTCAG CTAAACCATC GTTTCAATAT TCCTGTAATT
ATTTTGGCTC CAAGCAGTAT TCAACGCATA CTAGAGCCAC ACCTAGCCGG CACCAATAGC
CTATTTATTA ATAGACCACT TTTTTGTAAC AAGCTGCATC AAACCATTTG CGAACAATTA
GAAATTGTAG CTACTGAGAA TATTGAAAGT AGAACCTATC TTCACCAGCA CGAACCGCTT
GAACAGCAAC AGGTGAATAT ACTTGCGGTA GATGACAACC CCGCTAACTT AAAACTTGTA
ACAGAGCTGC TTAAAGGGTT AAACATTAAT GTGACGCCTG TGGAAAGTGG CGAACAAGCA
ATTGCCCAAA TAAAAGATTC CCATTTTGAT TTGATTCTAA TGGATATTCA AATGCCCTCT
ATGGATGGTA TTGAAACTAC CGGCCATATT CGTGAACTTG AAACAAGCGG CCCACGAACA
CCCATAATTG CACTTACCGC CCATGCAGTC AGCGAGCAAA AATCCAGATT ATTACTCGCA
GGCATGGATG ATTGTTTAAG CAAGCCCGTG AGCGAAAGCG AATTGCGCCA TGTTATTGAA
CGCTGGACCA ATGTAACTAT TGCCACCAAG ATTGCGCCCA CCAACCCGGC ACCTGTTGCA
AGCGCATTAA TTGAGCACTC ACCTAACGCC GATAAAACCG GTGAGAATCA ACCCGCAACA
GATAGTCAAG CTGCCGCCAT TGTAGATCGT GCGCTAGGCC TAAGCCTTAC CAACCAAAAC
CCTAGCCTGG CCGGCGATAT GCTTTCAATG CTTATAGAAA CACTACCCGA TGTGCTTCAC
AAAAGCCGTA CACAGTACGA AAACAAGCAA TTTGATGAAC TGCAAGAAAC AGTACATAAA
CTGCATGGAG GCTGCTGTTA TTGTGGTGTG CCACGACTAA AAGCCATAAG CGAACAGATT
GATAAAAACC TGCAAAAAAA CAAGTACAAC AATTTAGCGA ATGAAATACA ACTATTAGAA
GCGGAGATAA AAAACTTACT GCAATGGGCG GAAGAACACG ATATAGACGT GCTTTTTAGT
GACGATTAA
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| Protein sequence | MKSQSVQTEL FRLITVPVFA ACFILASTFF YLQKSHIEDQ FSNNKHLATE LLNSVVFSNK
ASTNPFAEAA NALLATGDYR SIVVSSATGQ QIASYGLPLR THSYQTQLGV ESQWTHEDSL
IYSFPLKKSN LQSSTPLWVI IAIDKRSWAI SEYQGTITIL LAGSLCLFLT FYFARRFRDA
LATPLQKIET GLRDFLKGNF EKSITIEPSS VFKDLASNIN RLGALQKSAN DELQLNIDQS
THELRETLET VEIQNIELDI ARKSALQASR VKSEFLANTS HEIRTPLNGI LGFSELLRKT
ELNNQQVDYL TTIEESAKGL LTIINDILDF SRLEIGTLTL EYKPVKIRQL IEDTLKLQTP
AANEKNIRML TIIDHDVPEN LLGDPLRLKQ VLSNLVSNAI KFTDVGYILL GVSKDQSSEN
QFTLKFRVTD SGIGLSQDQQ ERLFDPFTQL DSSESRLHGG TGLGLAIAKG LVDRMNGTIG
VESTLGKGAT FWFTSTLGRS PSASAKQTYL AGTLRGVHAL VFDHSNMGRM EITHYLTGWG
AKVCETGEME DIEPQISFFS NSEPVDIAII DSMIDIKTFD RLRICEHVTQ LNHRFNIPVI
ILAPSSIQRI LEPHLAGTNS LFINRPLFCN KLHQTICEQL EIVATENIES RTYLHQHEPL
EQQQVNILAV DDNPANLKLV TELLKGLNIN VTPVESGEQA IAQIKDSHFD LILMDIQMPS
MDGIETTGHI RELETSGPRT PIIALTAHAV SEQKSRLLLA GMDDCLSKPV SESELRHVIE
RWTNVTIATK IAPTNPAPVA SALIEHSPNA DKTGENQPAT DSQAAAIVDR ALGLSLTNQN
PSLAGDMLSM LIETLPDVLH KSRTQYENKQ FDELQETVHK LHGGCCYCGV PRLKAISEQI
DKNLQKNKYN NLANEIQLLE AEIKNLLQWA EEHDIDVLFS DD
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