Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_2210 |
Symbol | |
ID | 3965448 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 2812204 |
End bp | 2814618 |
Gene Length | 2415 bp |
Protein Length | 804 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637921300 |
Product | ribonuclease III |
Protein accession | YP_527682 |
Protein GI | 90021855 |
COG category | [N] Cell motility |
COG ID | [COG1749] Flagellar hook protein FlgE [COG4786] Flagellar basal body rod protein |
TIGRFAM ID | [TIGR03506] fagellar hook-basal body proteins |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTTTCG ATACAGCCTT AAGCGGTATT CGCGCCGCCT CCAGTGACCT GTCTGTAACA GGTAATAATA TCGCTAACGC GTCTACCACT GGTTTTAAAG CATCGCGCGC GGAATTTGGC GATGTATATG CTACCTCGGT GCTGGGTGCC GGTGTGAATG CGATAGGTAG CGGTGTGCAA GTCCAGGAAG TTGCGCAGCG TTTTAGTCAG GGCAACGTAG GTTTTACCGA AAACGAGCTG GATCTTGCTA TTAACGGTAA TGGTTTTTTT GTTGTGAGCC AGCAAGGGGA AACACTCTAC ACTCGAGCAG GTAGTTTTGG GTTAGATGAC GAAGGCTATG TGGTAAATAA CACGGGTGCA GTTTTGCAAG GCTTTTCGGC CGATGGAGCG GGTAATATAG GCGGTATTCA AGGTGATATT AGAATACAAA CCAGCAACCT TGCGCCAAGA CAAACGACAG GTGTCGAGTC GTTGTTAAAT TTAGATTCTA CCGAGCCGGT ATTGCAGACT ATTGGCGCGG AGTTTTCTAC GGCGGGTACT GCAGTTGGTG TTACGCAGAT AGGGCGTCAA ACCGCTGAAA AATCAACTCT ATTGATGGAT GCAATTACGT TCCCTATCCA AAACTTAGAT ACTAACCCAA TTATTTTCGA TATTACTCTT GCTGGGCCAA CAGTTGGTAA TAATGGCACG GTTACTATTA ACTTAGATTC TATAGATTTC TCTACATCGA TAGACGACCT AACCGAACTA CAGCAAATAG TTTCGTCAAT TAATTCGCAA CTATATTCGC CAAACGGCGG AGCGGACCCC ATCGATGTAG TAGCTTCAGT TGGCACCGAT GGATTGGGTA ACCCGGCTAT TTTGTTTGAA TCTATATACG AGGGTGAGCT TACCGATATT TCCATTTCAA TCGATCCAGC GAGCGACCCA GGTAACGTAG CGGCATTGGG TTTAGATGAT ACGAACGTGG GTACGACGGG TATTCCCTCC GTTTCTAATG GTTACCCCTT GCAAACAGTC GATATTGTAG GTCCTGATGG CAATATCGTG CCATTTTCTA TTCCCGCAGG CGCCGAAGCA GCTTCTACTG CATCGCGATT AAATGAGCTG CCTGGCATTT CAGCTACTGC ACGGTCTGAG GCTACTCTTT CGGGGTTTAC AAATGCCAGT GGTAATATTG TTGTTTCCGT TAACGACATA GCCTTAGTTG TTGATGATTT AGCAGATTTA GAAGCGGAAA TTAACGCGCT TTCTACCAGT TCTCTCGCGG GTATTACAGC AACAGTAAAT GCTGCTGGTA CGGCCATTAC TGTCACGTCG GCGGTTGGTA AAGATTTGAA ATTTGCCGTT AGTGGCGGTG CGGGGGATGC AATTACCGTG CAGGGCTCCA CTTTATCGGC CGCGCAAACT ATTACAGCCG GTGGCAATGG TGATACCGAT GCTATTGTTG TTGGTGGTGC AATAGATATG GTTTTGGAAG AGGGATACTC ACTAGAGAAC GCAGTGCCCC AGCTTACAGG TATATTCCAA CCTTTTACCG CGAATGAGTT TACCCCCATA GTTATCAATG CGTTTGATCC CACAGATCAG TCTACCTATA ACAGCGCTAC CTCGATGACT ATTTACGATA GTTTGGGTAA CTCGCACGTT ATGACCCAGT ATTTTGTTAA ACAAGATTAC GATGCAACAG ACCCAACCTC TGTGCCCAAC CATTGGGTAA TGTACGCACG TATTGATGAT GCCGATGTGG GCGACCCCGA TACAACTTTG CCACCGCCTG CTAATACGCA GCCTACACTG GCAAGTTACG ATGTGTATTT TAACGAGGAT GGTTCGCTCA ATACTTTATT AACTTCCGAT ATGCTTATCT CAAACTGGAC GCCAGTGGAT GCAGATGGCA ACCCTAATGG TGCCTTGGGG CCTCAGAATA TTTTGGCTGG CGGTACTCAA ACTGTTGTTG AGCCACCTAC AAGCTCAAAC TTCGTGATCT CGCTTGAGGG TACCACGCAG TTTGGCTCAG AGTTTTCTGT AAACGATATT AGCCAAAACG GGTTTTCTAC TGGCCGCTTA TCGGGGCTAA ATATTGCCGA TAACGGGACG ATCTTTGCCC GTTTTACCAA CGGCCAATCG TTAAGGTTGG GGCAAGTTGT GCTAGCAGAC TTTTCTAATC AGCAGGGTTT GCAGCCAACC GGTAATACCA TGTGGGCAGA AACATTTGAG TCAGGTTCAC CGAATGTGGG TACTCCAGGT AGTGCGGCAT TAGGTGCGGT ACAAGCAGGA GCGTTAGAAG AATCTAATGT AGACCTCTCT GAACAGCTGG TTAACCTTAT TATTGCGCAG CGCAATTTCC AAGCCAGCGC AAAAACCATC GAAACGGCCG ATGCCGTAAC CCAAACAATT ATTAACTTAA GATAA
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Protein sequence | MPFDTALSGI RAASSDLSVT GNNIANASTT GFKASRAEFG DVYATSVLGA GVNAIGSGVQ VQEVAQRFSQ GNVGFTENEL DLAINGNGFF VVSQQGETLY TRAGSFGLDD EGYVVNNTGA VLQGFSADGA GNIGGIQGDI RIQTSNLAPR QTTGVESLLN LDSTEPVLQT IGAEFSTAGT AVGVTQIGRQ TAEKSTLLMD AITFPIQNLD TNPIIFDITL AGPTVGNNGT VTINLDSIDF STSIDDLTEL QQIVSSINSQ LYSPNGGADP IDVVASVGTD GLGNPAILFE SIYEGELTDI SISIDPASDP GNVAALGLDD TNVGTTGIPS VSNGYPLQTV DIVGPDGNIV PFSIPAGAEA ASTASRLNEL PGISATARSE ATLSGFTNAS GNIVVSVNDI ALVVDDLADL EAEINALSTS SLAGITATVN AAGTAITVTS AVGKDLKFAV SGGAGDAITV QGSTLSAAQT ITAGGNGDTD AIVVGGAIDM VLEEGYSLEN AVPQLTGIFQ PFTANEFTPI VINAFDPTDQ STYNSATSMT IYDSLGNSHV MTQYFVKQDY DATDPTSVPN HWVMYARIDD ADVGDPDTTL PPPANTQPTL ASYDVYFNED GSLNTLLTSD MLISNWTPVD ADGNPNGALG PQNILAGGTQ TVVEPPTSSN FVISLEGTTQ FGSEFSVNDI SQNGFSTGRL SGLNIADNGT IFARFTNGQS LRLGQVVLAD FSNQQGLQPT GNTMWAETFE SGSPNVGTPG SAALGAVQAG ALEESNVDLS EQLVNLIIAQ RNFQASAKTI ETADAVTQTI INLR
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