| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2106 |
|---|
| Symbol | sucA |
|---|
| ID | 3967490 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 2690725 |
|---|
| End bp | 2693586 |
|---|
| Gene Length | 2862 bp |
|---|
| Protein Length | 953 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637921196 |
|---|
| Product | 2-oxoglutarate dehydrogenase E1 component |
|---|
| Protein accession | YP_527578 |
|---|
| Protein GI | 90021751 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0567] 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes |
|---|
| TIGRFAM ID | [TIGR00239] 2-oxoglutarate dehydrogenase, E1 component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000654804 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCTGTC ATACGGTGGG CGAAATGCAA GAAAGTATCA TGGAGTTATT GTGGAAAACC
TCGCATCTAT CTGGAGGTAA CGCCGCATAT GTAGAAGATC AGTACGAATC CTATCTGTCA
GACCCTCATT CCGTTTCGGA AGAGTGGCGC GACTACTTCG ATAAGTTACC CCGTGTTAAC
GGCAGCGCTA GCGAAGATGT AAACCATTCC GAAATCATTA AGTATTTCGA GCTGCTCGGT
AAAAACCGCG CGCGTCCAAT AATTGTGCCC GGTGCTGGTA GTGGCGATAT TGCCCACGAG
CGCAAGCAGG TAGAAGTTGT TCAGTTGGTA AATGCCTACC GCTTAAGCGG TCATCAAAAA
GCCAATATCG ATCCGCTAAA TCTACGCGCA GTTAAAAACC CTGTTGATTT AGACTTGGGC
TTTCACCGCT TGAATACAGC CGATTTAGAT TCTGTATTCC AAACCGGTGA CCTCGCATTT
GGCTACAAAG AAGCCAAGCT GAAAGACATC ATTGCAGACC TAGAAAAAAC TTACTGCGGC
AACATTGGCG CAGAAGTTAT GCACATTACT AACTACGAAG AGCGTCGCTG GTTGTTAAAC
CGCTTAGAGC GTTCGCGTTC TCAGCCAGAT TTCGGCCCTA AAGCTAAGCG CAATATCTTG
CGTCGTTTGA CTGCAGCCGA AGGCTTAGAG CGTCATTTAG ATAGCAAATA CCCAGGTACA
AAGCGCTTTG GTTTGGAAGG GGGCGAAAGC TTCATTCCAT TGCTTGATGC GTTAATTCGT
CGTGTTGGCG AATACGGTGC CAAAGAAATG GTATTGGGTA TGGCTCACCG TGGCCGCTTA
AATGCGCTGG TGAACATTCT TGGTAAAAAC CCATCTGATT TGTTTGATGA GTTTGAAGGT
AAGAAGCTAG TAGATACCTC TGGTGACGTT AAGTATCACC AAGGTTTCTC GTCAAACGTA
ATGACTCCTG GTGGCGAAAT GCACCTTGCG TTGGCGTTTA ACCCATCTCA CTTGGAAATT
GTATCTCCAG TGGTTGAGGG GTCTGTACGT GCACGTCAAG ATCGCCGCGG CGACAAAGAC
GGCCACACCG TAGTGCCTGT TGTAGTACAT GGTGATGCTG CGTTTGCTGG TCAGGGCGTT
GTGATGGAAA CATTCCAAAT GTCACAAACC CGCGCATACA AAACTGGCGG TACTGTGCAC
TTGGTAATTA ACAACCAAGT AGGTTTCACT ACTAGCCGTG CAGACGACGC ACGCTCTACA
GCTTACTGTA CCGACGTGGC AAAAATGATC GAAACACCGA TCTTCCACGT TAACGGTGAC
GACCCAGAAG CGGTTGTTTA CGTTACTCAA TTGGCAGCAG ATTACCGCAA CGAATTTAAG
AAAGATGTGG TTATTGATTT GGTTTGTTAT CGCCGTCGTG GCCACAACGA AACCGATGAG
CCTTCATCTA CTCAGCCGTT AATGTACAAG GCTATTCGTT CGCACAAAAC TACTCGCACT
GTGTATGCAG AGCAGCTTGT TAACGCTGGT GTGGTTACTC AAGACGAAGC GGACCAGATG
ACTAACGATT ATCGTGCTGC TTTGGATAGA GGCGAGCACG TAGCGCGTGG TTTGGTAAGC
GAGCCGGATT CTTCGCTGTT TGTAAACTGG TCGCCTTATA TTGGTCACGA CTGGAATACA
CCTGCAGATA CTACGTATCC AATCAAAGAA TTGCAGTCGT TGGCAGAGCA AACTAGCCAT
GTGCCAGATG GTGTTCAGGT ACAGCGTCAG GTAGCGAAAA TCTACGACGA CCGTCGCAAA
ATGGCGGGCG GTGCCTTGCC AATTAACTGG GGCATGGCCG AAACTCTGGC TTACGCTACC
TTGTTGAAAG AAGGCCATAA AATTCGTTTA ACGGGGCAAG ATGTTGGTCG TGGTACTTTC
TCGCATCGCC ATGCTGTTGT GCATAACCAA AAAACTGGTG AAGCTTACAT TCCGTTAGCG
AATATTTCAG AAGATCAAGC GCCGTTAGAT ATTTACGATT CGTTATTATC TGAAGAAGCG
GTGCTGGCGT TCGAATACGG TTACGCGACT ACTTCGCCAA AAGGTTTGGT TATTTGGGAG
GCTCAGTTCG GTGATTTCGC CAACGGCGCT CAAGTTGTTA TTGACCAATT TATTACAAGT
GGCGAGCACA AGTGGCAGCG TTTGTGTGGC TTAACTATGC TATTGCCACA TGGTTACGAA
GGGCAGGGGC CAGAGCACTC TTCAGCACGT TTAGAGCGCT TTATGCAATT GTGTGCAGAG
CACAACATTC AAGTGTGTAT CCCTACCACG CCTGCGCAGG TTTATCACAT GATCCGCCGT
CAGGCTATTC GCCCAATGCG CAGACCACTT GTTGTGATGA GCCCGAAATG GATTCTTCGT
CACAAGTTGG CAACGTCTAC GTTAGAAGAG CTAGCTGAAG GTAGCTTTAA AACAGTAATT
GGCGATGACG TTGTTAAGCC AGAAGAAGCC AAACGTGTAA TTTTGTGTAG CGGTAAGGTT
TATTACCATC TTTTCGAGGC TCGCGAAGAG CGTGAAGAGA AAGACGTTGC ATTAATTCGC
ATTGAGCAAC TTTACCCATT CCCCGAAGAG GCGCTGCGCG TTGAGCTAGC AAAATACCCT
GGTTTGGTGG ATGTAGTGTG GTGTCAGGAA GAGCCGCAAA ACCAAGGCGC TTGGTACTCT
AGCCAGCACC GCATGCGCAG AGTTGTAGAA CGAGTTAACG AAGACGCAGA GTTGCGTTAC
GTTGGTCGGG CATCTTCTTC TGCACCTGCA GCGGGTTACA TGAGCACCCA CTTGGAAGAA
CAGAATAAGT TCATCAACGC GGCATTGGAC ACTTCCGTTT AA
|
|---|
| Protein sequence | MPCHTVGEMQ ESIMELLWKT SHLSGGNAAY VEDQYESYLS DPHSVSEEWR DYFDKLPRVN
GSASEDVNHS EIIKYFELLG KNRARPIIVP GAGSGDIAHE RKQVEVVQLV NAYRLSGHQK
ANIDPLNLRA VKNPVDLDLG FHRLNTADLD SVFQTGDLAF GYKEAKLKDI IADLEKTYCG
NIGAEVMHIT NYEERRWLLN RLERSRSQPD FGPKAKRNIL RRLTAAEGLE RHLDSKYPGT
KRFGLEGGES FIPLLDALIR RVGEYGAKEM VLGMAHRGRL NALVNILGKN PSDLFDEFEG
KKLVDTSGDV KYHQGFSSNV MTPGGEMHLA LAFNPSHLEI VSPVVEGSVR ARQDRRGDKD
GHTVVPVVVH GDAAFAGQGV VMETFQMSQT RAYKTGGTVH LVINNQVGFT TSRADDARST
AYCTDVAKMI ETPIFHVNGD DPEAVVYVTQ LAADYRNEFK KDVVIDLVCY RRRGHNETDE
PSSTQPLMYK AIRSHKTTRT VYAEQLVNAG VVTQDEADQM TNDYRAALDR GEHVARGLVS
EPDSSLFVNW SPYIGHDWNT PADTTYPIKE LQSLAEQTSH VPDGVQVQRQ VAKIYDDRRK
MAGGALPINW GMAETLAYAT LLKEGHKIRL TGQDVGRGTF SHRHAVVHNQ KTGEAYIPLA
NISEDQAPLD IYDSLLSEEA VLAFEYGYAT TSPKGLVIWE AQFGDFANGA QVVIDQFITS
GEHKWQRLCG LTMLLPHGYE GQGPEHSSAR LERFMQLCAE HNIQVCIPTT PAQVYHMIRR
QAIRPMRRPL VVMSPKWILR HKLATSTLEE LAEGSFKTVI GDDVVKPEEA KRVILCSGKV
YYHLFEAREE REEKDVALIR IEQLYPFPEE ALRVELAKYP GLVDVVWCQE EPQNQGAWYS
SQHRMRRVVE RVNEDAELRY VGRASSSAPA AGYMSTHLEE QNKFINAALD TSV
|
|---|
| |